Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco01g1492 ATGCGGATGAGCTGTAATGGATGTCGTGTTCTCAGAAAAGGTTGCAGTGAAGATTGTAGCATCAGACCTTGCTTGCAGTGGATCAAATCTCCAGAATCTCAAGCTAACGCCACCGTGTTCCTTGCGAAGTTCTACGGCCGAGCTGGCCTCTTGAATCTCATCAACGCTGGCCCCCAACACCTTCGTCCTGCTATTTTTCGGTCTCTGCTTTACGAAGCATGCGGGCGGATACTTAACCCGATATATGGGTCCGTGGGTCTGCTATGGTCCGGGAACTGGCCAAGGTGTCAGGCCGCCGTGGAGGCGGTTCTGAAGGGTGATCCGATTACTCCGATCAACTCCGATGCCGCCGAGAGTGGGCAGGGTCCACCGCTGAAGCCTTACGACATACGTCATGTGAACAAGGACAAGAACTCGACCGAGTCGAACGATTTCCAACGGGTCAAGTCCAAGTCACGGTTCAAGCGATCCGCCGGGAAGACCAAGAAGCTGAACAAGGGGACCGAGTTAAAAACCGAGTTGAAGTCGGCTGAACTGGAAGAACCGCGCAGGGGATGCACAGTTTGCTGTGCGACCGTTGATGAACCGGCAAACCGGTCCGTGAGCCACGAGTCGTCGCTGAGCCACCAGTCCGAGGAGGCGCCGCCGGAAGTGGCGGTGGCGGAAGGGGATAGTAAAGAGAGCGAGAGCATGGTGTCAGAAGAGACCGCGGAGACTTCTATGCTCTTCCGGGACGAGCCGGAATCAACACCCAAACAGAGTGATGGAGCCGATGGGGCCGACCTGGGGCTGGATCTGACGCTGGGGATCAAACCTATGACACGTGAGGCTCACGTGATACCGGTCAAGAAGAGAAAGGTAGAATTTCAATTTCAAGACTCAGCTAGCGACTCGGCGGCTAATAAGAAAGTGGCAGGCATGAAGCTGGGGCTAGAATGCTCGGCTTAA 948 0.5538 MRMSCNGCRVLRKGCSEDCSIRPCLQWIKSPESQANATVFLAKFYGRAGLLNLINAGPQHLRPAIFRSLLYEACGRILNPIYGSVGLLWSGNWPRCQAAVEAVLKGDPITPINSDAAESGQGPPLKPYDIRHVNKDKNSTESNDFQRVKSKSRFKRSAGKTKKLNKGTELKTELKSAELEEPRRGCTVCCATVDEPANRSVSHESSLSHQSEEAPPEVAVAEGDSKESESMVSEETAETSMLFRDEPESTPKQSDGADGADLGLDLTLGIKPMTREAHVIPVKKRKVEFQFQDSASDSAANKKVAGMKLGLECSA 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco01g1492 315 MobiDBLite consensus disorder prediction 129 151 - -
Acco01g1492 315 ProSiteProfiles LOB domain profile. 3 109 IPR004883 -
Acco01g1492 315 MobiDBLite consensus disorder prediction 198 212 - -
Acco01g1492 315 Pfam Lateral organ boundaries (LOB) domain 4 102 IPR004883 -
Acco01g1492 315 MobiDBLite consensus disorder prediction 113 169 - -
Acco01g1492 315 PIRSF AS2 1 308 IPR017414 -
Acco01g1492 315 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 3 267 - -
Acco01g1492 315 MobiDBLite consensus disorder prediction 219 233 - -
Acco01g1492 315 MobiDBLite consensus disorder prediction 197 260 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco01g1492 Acco-ChrAcco01 26592766 26593813 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco01g1492 1 287 AS2 family AT3G02550 57.840 1.35e-106 310
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Acco01g1492 LOB 6.8e-23 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco01g1492 01 26592766 26593813 Acco01g1492 01 26592766 26593813 ECH