LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Acco01g1458	ATGGAGGGTTTTAATGTGAATTGTAGTAGTCCTTATGAACATGAGTGCTTGAAATGTGTTGATTTTGGTGGTCAATGTGGATTTGATGACGATTTGGGGAAACCAATTTGCATTTGTGGTGATCACCTGTGTCCCTCCCCAGAGAAGTCTAAGAGAGGCCTTATAGCAGGCGTTAGTGCAGTATCAGCTGGTGGGCTTGCTCTAATCTTGGTTTTCATTATTTATATTTGCAAGAAGCGTTTCAGAACAGAAAATGGGAAAATCTTCAGAGAGGGAAGAGATCATCATGATCACAATCTTCAATCCCTCATGAGAAACTATGGCTCTTTGGCACCAAAGAAATATAGTTATTCAGAAGTTAAAAGAATGACAAAATCATTTTCAAACAAATTGGGGGAGGGAGGGTATGGTGTTGTATACAAAGCAAGCCTACCTGATGGTCGTCTTGTGGCAGTTAAAGTGATAAGGGAATCTAAAGGAGGTGGAGAAGAATTTCTAAATGAAGTTGCAAGTATCAGCAGAACCTCCCATGTCAATATAGTCACTCTCCTGGGATTTTGTTTTGAAAGGAACAAAGGAGTACTAATCTATGAATACATGTCAAATGGTTCCTTGGATAATTTCATTTATAAAAGAGGATCTCTAAATGCTTTTTGTACCTTGGAGTGGAAGGTATTGTACCAAGTTGCTATTGGCATTGCTCGTGGGCTTGAGTACTTGCATCGGGGTTGTAACACGAGAATTTTGCACCTTGATATCAAACCCCAAAACATCCTCTTGGACGAAGAATTCTCCCCCAAAATATCTGATTTTGGATTAGCTAAAATATGTCAAAAGAGAGAGAGTATTGTGTCAATACTGGGCACAAGAGGAACAGTAGGGTTCATTGCACCAGAACTATTCAACAGAGCATTTGGTGGTGTTTCTCACAAAGCTGATGTCTATAGCTATGGCATGTTAATCCTTGAAATGGTTGGAGGAAGGAAGAATTATGACAGTGGAGGCTCACAAACCGATGAACAGTATTTTCCAGATTGGATTTATAAGGATCTTGAACATGGTAAGCATCCGGCTAGTTCTGTAGTAATCACAGTGGAAGATGATGAAATGACCAGCTATGAGTAA	1125	0.3964	MEGFNVNCSSPYEHECLKCVDFGGQCGFDDDLGKPICICGDHLCPSPEKSKRGLIAGVSAVSAGGLALILVFIIYICKKRFRTENGKIFREGRDHHDHNLQSLMRNYGSLAPKKYSYSEVKRMTKSFSNKLGEGGYGVVYKASLPDGRLVAVKVIRESKGGGEEFLNEVASISRTSHVNIVTLLGFCFERNKGVLIYEYMSNGSLDNFIYKRGSLNAFCTLEWKVLYQVAIGIARGLEYLHRGCNTRILHLDIKPQNILLDEEFSPKISDFGLAKICQKRESIVSILGTRGTVGFIAPELFNRAFGGVSHKADVYSYGMLILEMVGGRKNYDSGGSQTDEQYFPDWIYKDLEHGKHPASSVVITVEDDEMTSYE	374

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Acco01g1458	374	Gene3D	Transferase(Phosphotransferase) domain 1	200	370	-	-
	Acco01g1458	374	PANTHER	RUST RESISTANCE KINASE LR10-RELATED	104	362	IPR045874	GO:0004672
	Acco01g1458	374	FunFam	Os07g0541700 protein	200	292	-	-
	Acco01g1458	374	Gene3D	Phosphorylase Kinase; domain 1	99	199	-	-
	Acco01g1458	374	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	248	260	IPR008271	GO:0004672\|GO:0006468
	Acco01g1458	374	ProSiteProfiles	Protein kinase domain profile.	125	374	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Acco01g1458	374	FunFam	serine/threonine-protein kinase PBS1-like	93	199	-	-
	Acco01g1458	374	SMART	serkin_6	125	374	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Acco01g1458	374	Pfam	Wall-associated receptor kinase C-terminal	2	41	IPR032872	-
	Acco01g1458	374	ProSitePatterns	Protein kinases ATP-binding region signature.	131	153	IPR017441	GO:0005524
	Acco01g1458	374	SUPERFAMILY	Protein kinase-like (PK-like)	105	347	IPR011009	-
	Acco01g1458	374	Pfam	Protein kinase domain	128	337	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Acco01g1458	Acco-ChrAcco01	25850715	25853354	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Acco01g1458	2	370	Receptor kinase-like Gene Family	AT1G66910	46.859	1.93e-112	340

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRK10L-2	Acco01g1458		Pkinase	6.5e-44	CL0016