Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco01g1368 ATGAAAAGGGAAAGAGATCAAGTTCTTGACTGCATCTCCATGGCCAACTGTTTGATGTTGCTTTCTCGTGGCGGAGGCCAATTTGATCGGCCGGTGATCGCAGCTGCCTCTCATGCCCATGTTGATAGCCATAATGATCGTGTGTTCGAGTGCAAGACTTGTAACCGGCAGTTCCCATCGTTTCAAGCCTTGGGCGGCCATCGGGCGAGCCATAAGAAGCCGAGACCGGCCACCGCCGGTGAGATGGACCCGCTTAATCATCATGAAGCGAAGCCTAAAACTCACGAGTGTTCTATTTGTGGGATGGAGTTTGCAATAGGGCAAGCTTTGGGTGGTCACATGAGAAAGCACAGAGCTGCTGCAACTTTGAATAAAAAAAGTGATAGTGCCCACCATCAAAACAAGACGACGACTTTGAGTAGCAACAGTGACGAAGGCAGTTGTCTTGATTCAGATCACCAGGTTAATAGTTCTTCTGGCGAAAATAGGAAGAAAGTTTTGGTTTTGGATCTGAATTTGACACCTTCTGAGAATGATTCGGAGTTTATTAATTTCATTTGA 561 0.467 MKRERDQVLDCISMANCLMLLSRGGGQFDRPVIAAASHAHVDSHNDRVFECKTCNRQFPSFQALGGHRASHKKPRPATAGEMDPLNHHEAKPKTHECSICGMEFAIGQALGGHMRKHRAAATLNKKSDSAHHQNKTTTLSSNSDEGSCLDSDHQVNSSSGENRKKVLVLDLNLTPSENDSEFINFI 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco01g1368 186 Gene3D Classic Zinc Finger 47 117 - -
Acco01g1368 186 MobiDBLite consensus disorder prediction 133 161 - -
Acco01g1368 186 SUPERFAMILY beta-beta-alpha zinc fingers 47 117 IPR036236 -
Acco01g1368 186 ProSitePatterns Zinc finger C2H2 type domain signature. 51 71 IPR013087 -
Acco01g1368 186 MobiDBLite consensus disorder prediction 74 90 - -
Acco01g1368 186 ProSitePatterns Zinc finger C2H2 type domain signature. 97 117 IPR013087 -
Acco01g1368 186 SMART c2h2final6 95 117 IPR013087 -
Acco01g1368 186 SMART c2h2final6 49 71 IPR013087 -
Acco01g1368 186 MobiDBLite consensus disorder prediction 116 161 - -
Acco01g1368 186 Pfam C2H2-type zinc finger 95 119 - -
Acco01g1368 186 Pfam C2H2-type zinc finger 48 74 - -
Acco01g1368 186 PANTHER ZINC FINGER PROTEIN ZAT5 8 179 - -
Acco01g1368 186 MobiDBLite consensus disorder prediction 64 90 - -
Acco01g1368 186 ProSiteProfiles Zinc finger C2H2 type domain profile. 95 122 IPR013087 -
Acco01g1368 186 ProSiteProfiles Zinc finger C2H2 type domain profile. 49 76 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco01g1368 Acco-ChrAcco01 23347922 23348482 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco01g1368 1 179 C2H2 Transcription Factor Family AT2G28710 43.575 4.11e-37 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Acco01g1368 zf-C2H2_6 4.7e-09 CL0361