Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco01g1365 ATGGTTCTCTCCAACAAGAAGCTTAAACAGAAGCTTAGAGCGGAGTTAGCTCAATCTGAGTCCGCAAATCCAGATTGTTCTTTCAAAACTCTTCTTGACTCTGCCACCCCGAAAATCCTATTATCCAAGAGAGAGAAACGCCGAGAGGTTCGCTCTTTGCAACAAACCGAGACTACACAAGAAGGTGGTGATGGTCGTAGCGTTGATGAGAGTAAAGAAGACGAAGTAACACAGAAGAAGAGCAAAAAGAGGAAGAGGAAGGCTGAGGACAGCAGTGTGGAAAATGGGACTGTGAAGGATGCGAAGACATCGAAGAAGAAACGTGATAAGAAGAAGAAGAACAAGAATAACAAAAATGCCAAAACGGACCAGGAAAAGGATGCTAATCCTGGAGATGAGAAGCTAGAGGCTTCAGAGTTAACTAAGAGTAATGGCAGGGAGCAAAATGTTGATGTTCCTACAAAAGTTTATGTTGGAGGAATTCCCTACTATTCAACTGAGGATGATATTCGAAGCTATTTCGAAGGCTGTGGCACAATTACTGAAATTGATTGCATGACATTTCCTGAGACTGGCAAGTTCAGAGGGATTGCCCTTATTAATTTTAAGACTGAAGCTGCTGCTAAACGAGCGTTGGCTCTTGATGGATCTGACATGGGAGGACTCTTCCTTAAAATCCAACCTTACAAAACAACTCGAACCATTAAAGCTTCTGATTTCGCCCCAAAACCTGTGGAAGGCTACAACAGAACCTATGTTGGAAATTTGTCGTGGGACATAACAGAGGATCAATTAAGGAGTCTATTCTCAAACTGCAGCATATCATCCATACGTTTAGGTATGGATAAGGAGACGGGAGAATTCCGAGGGTATGCCCATGTGGATTTCACCGATAGTCAATCGGTGAAAACAGCCCTTGCCTTGGACCAAAAGATGATGCATGGGAGACCAGTTAGGATAACATGCGCAGTTCCTTTAAAGAAGCCATGGAAGCAAACAACTGATGTGCGTGCGCCTATGAACACCGAAGTTGATGGTGAGAAGCCAAGCTCCACTGGAAGTGGCAAAGTGAAGAGGAGGACATGCTTTGAGTGCGGTGAAAAGGGGCATATTTCTTCTGCATGCCCAAAGAAACAAACAAACGATGCGCCTGTGCCTGCGCCAATGAACACCCAAGTTAATAGTGAGAAGCCTAGCTCCACTGGAAGTGGCAAAGTGAAGAGGAGGACATGCTTTGAGTGTGGTGAAAAGGGGCATATTTCTTCTGCATGCCCGAAGAAACAAACAACCGATGTGCCTGCACCAACAAACACCCAAGTTCATGGTGAGAAGCCAAGCTCCACAGGAAGTGGCAAAGTGAAGAGGAGGACATGCTTTGAGTGTGGTGAAAAGGGGCATATTTCTTCTGCATGCCCAAAGAAACAGGATGTTGATTCAAATACAACCTAG 1449 0.4479 MVLSNKKLKQKLRAELAQSESANPDCSFKTLLDSATPKILLSKREKRREVRSLQQTETTQEGGDGRSVDESKEDEVTQKKSKKRKRKAEDSSVENGTVKDAKTSKKKRDKKKKNKNNKNAKTDQEKDANPGDEKLEASELTKSNGREQNVDVPTKVYVGGIPYYSTEDDIRSYFEGCGTITEIDCMTFPETGKFRGIALINFKTEAAAKRALALDGSDMGGLFLKIQPYKTTRTIKASDFAPKPVEGYNRTYVGNLSWDITEDQLRSLFSNCSISSIRLGMDKETGEFRGYAHVDFTDSQSVKTALALDQKMMHGRPVRITCAVPLKKPWKQTTDVRAPMNTEVDGEKPSSTGSGKVKRRTCFECGEKGHISSACPKKQTNDAPVPAPMNTQVNSEKPSSTGSGKVKRRTCFECGEKGHISSACPKKQTTDVPAPTNTQVHGEKPSSTGSGKVKRRTCFECGEKGHISSACPKKQDVDSNTT 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco01g1365 482 Gene3D - 402 434 - -
Acco01g1365 482 Gene3D - 449 479 - -
Acco01g1365 482 ProSiteProfiles Zinc finger CCHC-type profile. 362 377 IPR001878 GO:0003676|GO:0008270
Acco01g1365 482 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 70 228 - -
Acco01g1365 482 CDD RRM1_PHIP1 156 227 IPR034361 -
Acco01g1365 482 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 252 318 IPR000504 GO:0003723
Acco01g1365 482 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 156 222 IPR000504 GO:0003723
Acco01g1365 482 MobiDBLite consensus disorder prediction 374 406 - -
Acco01g1365 482 ProSiteProfiles Zinc finger CCHC-type profile. 458 473 IPR001878 GO:0003676|GO:0008270
Acco01g1365 482 MobiDBLite consensus disorder prediction 63 80 - -
Acco01g1365 482 Gene3D - 237 331 IPR012677 -
Acco01g1365 482 SMART rrm1_1 250 321 IPR000504 GO:0003723
Acco01g1365 482 SMART rrm1_1 155 227 IPR000504 GO:0003723
Acco01g1365 482 MobiDBLite consensus disorder prediction 87 103 - -
Acco01g1365 482 Pfam Zinc knuckle 456 473 IPR001878 GO:0003676|GO:0008270
Acco01g1365 482 Pfam Zinc knuckle 360 377 IPR001878 GO:0003676|GO:0008270
Acco01g1365 482 Pfam Zinc knuckle 409 426 IPR001878 GO:0003676|GO:0008270
Acco01g1365 482 SMART c2hcfinal6 410 426 IPR001878 GO:0003676|GO:0008270
Acco01g1365 482 SMART c2hcfinal6 361 377 IPR001878 GO:0003676|GO:0008270
Acco01g1365 482 SMART c2hcfinal6 457 473 IPR001878 GO:0003676|GO:0008270
Acco01g1365 482 ProSiteProfiles Zinc finger CCHC-type profile. 411 426 IPR001878 GO:0003676|GO:0008270
Acco01g1365 482 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 249 325 IPR000504 GO:0003723
Acco01g1365 482 MobiDBLite consensus disorder prediction 16 30 - -
Acco01g1365 482 MobiDBLite consensus disorder prediction 116 133 - -
Acco01g1365 482 MobiDBLite consensus disorder prediction 16 133 - -
Acco01g1365 482 MobiDBLite consensus disorder prediction 39 54 - -
Acco01g1365 482 MobiDBLite consensus disorder prediction 423 446 - -
Acco01g1365 482 SUPERFAMILY Retrovirus zinc finger-like domains 350 381 IPR036875 GO:0003676|GO:0008270
Acco01g1365 482 SUPERFAMILY Retrovirus zinc finger-like domains 397 429 IPR036875 GO:0003676|GO:0008270
Acco01g1365 482 Gene3D - 41 236 IPR012677 -
Acco01g1365 482 SUPERFAMILY RNA-binding domain, RBD 152 231 IPR035979 GO:0003676
Acco01g1365 482 MobiDBLite consensus disorder prediction 423 453 - -
Acco01g1365 482 SUPERFAMILY Retrovirus zinc finger-like domains 445 477 IPR036875 GO:0003676|GO:0008270
Acco01g1365 482 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 154 231 IPR000504 GO:0003723
Acco01g1365 482 SUPERFAMILY RNA-binding domain, RBD 245 329 IPR035979 GO:0003676
Acco01g1365 482 Gene3D - 341 387 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco01g1365 Acco-ChrAcco01 23295600 23299388 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco01g1365 154 323 Eukaryotic Initiation Factors Gene Family AT3G16380 30.387 8.11e-09 55.8