Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco01g1337 ATGAGGAATCTTACTATGGAGGAGGAGAACTCCCATGTCATAGACTGGGTTCGAGATGGTTCATGGGACTTCACAAGACTTGCTGATTGTGTGGCTCCGGAGGTAATCCAAAGAATTAGGGCATTAATGCCCCCGAGATTAGATGCAGGACATGATGCTTTGATTTGGGGAGCTTCTAAAGATGAATCTGATATCTCTGACTCTCTAAGATCTCTAAAACAGGCAAGTATGGCTTCTCTGCTACCATATGGCGACGTTGATTTCAGCTTGAGGGCAATGGCGGGTCGCGCTGAGGGATTTGGCCGCAACGCCATTGGTGGCCTTCACGGCCCTCTCTATTTCGTCACCACCCTCGCTGATGATGGTCCTGGATCCCTTCGGGATGGATGCCGTAGAAAGGAGCCACTCTGGATTGTTTTTGAAGTCTCGGGTACAATTCATCTTTCATCATACTTGAGTGTATCTTCTTATAAGACAATAGATGGCCGAGGCCAGAGCATAAAGCTCACAGGAAAGGGCTTAAGGTTGAAAGAATGTGAGCATATTATTGTATGCAACCTTCAGTTTGAAGGTGGGAGGGGCCATGATGTTGATGGCATTCAAATAAAACCAAACTCTAGGCACATATGGATAGATCGGTGCAGTCTTCGTGATTACGATGATGGGCTTATAGACATTACTAGACAAAGCACAGATATCACTGTATCAAGATGTTACTTTGCACAGCATGATAAGACCATGCTAATTGGAGCTGACCCATCTCACATCGGCGATCGATGTATCAGGGTGACAATTCATCACTGCTTCTTTGATGGGACACGACAAAGACAACCTCGTCTTAGATTTGGAAAAGTTCATCTGTACAACAATTACACCAGAAACTGGGGTATATATGCTGTTTGTGCTAGTGTTGAATCCCAGATATACTCTCAGTGCAACATTTATGAAGCAGGAAACAAGAAAAAGACTTTTGAATTCTATACAGAGAAGGCGGCAGATAAGGCGGAGCAGAAATCTGGCACCATAATATCTGAAGGAGACATGTTTCTGCATGGTGCACAACCATGCTTACAAACACAACACACAGAAGGATGCAACATGTTCCACCCTTCTGAACATTATCCAACTTGGACTATGGAACCACCCTCACATTCTTTTAAAGATGTTCTGCAAATATGTGCAGGTTGGCAATCTGTTTGTCGGCCGGCCGAAATCTCAACTAATTTGAATTAG 1233 0.4428 MRNLTMEEENSHVIDWVRDGSWDFTRLADCVAPEVIQRIRALMPPRLDAGHDALIWGASKDESDISDSLRSLKQASMASLLPYGDVDFSLRAMAGRAEGFGRNAIGGLHGPLYFVTTLADDGPGSLRDGCRRKEPLWIVFEVSGTIHLSSYLSVSSYKTIDGRGQSIKLTGKGLRLKECEHIIVCNLQFEGGRGHDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFAQHDKTMLIGADPSHIGDRCIRVTIHHCFFDGTRQRQPRLRFGKVHLYNNYTRNWGIYAVCASVESQIYSQCNIYEAGNKKKTFEFYTEKAADKAEQKSGTIISEGDMFLHGAQPCLQTQHTEGCNMFHPSEHYPTWTMEPPSHSFKDVLQICAGWQSVCRPAEISTNLN 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco01g1337 410 PANTHER PECTATE LYASE 18-RELATED 91 362 IPR045032 GO:0030570
Acco01g1337 410 SMART amb_all 123 321 IPR002022 -
Acco01g1337 410 Pfam Pectate lyase 152 314 IPR002022 -
Acco01g1337 410 Gene3D - 85 386 IPR012334 -
Acco01g1337 410 PRINTS Pollen allergen Amb family signature 276 295 IPR018082 -
Acco01g1337 410 PRINTS Pollen allergen Amb family signature 96 113 IPR018082 -
Acco01g1337 410 PRINTS Pollen allergen Amb family signature 298 317 IPR018082 -
Acco01g1337 410 SUPERFAMILY Pectin lyase-like 94 397 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco01g1337 Acco-ChrAcco01 22495061 22503089 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco01g1337 118 404 Polysaccharide Lyase AT3G55140 82.230 0.0 511