Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco01g1238 ATGAGTATGGAAAGCCTTGCATCCAGCTTCAGTCAAGAACATGGCCCCATCAACCAATCTTTCTTCTCTGGGTGTCTTCCTTATTACCAGACGCCATCATCGAGTAGTACAGTGATGGCTTCAAAATCACCAAAATCATCAAATTTAAGCAACAGGAAGCCATCTATAAATATCACCATCCCTCCCATGGGATTAACAAGGATGAGCTCATCGATGACGACATCTTCGGATGTCGTCGCAGAGAACAACGACAAGCACTACCGAGGAGTTCGACGGCGGCCGTGGGGGAAGTTTGCGGCAGAGATTCGTGACCCAAATCGAAAGGGATCAAGGGTTTGGCTTGGAACCTTCGATACAGCCATGGAAGCAGCAAAAGCATATGACAGAGCAGCGTTTAAGATGAGAGGAAGCAAAGCTATACTCAATTTCCCTCTTGAGATTGAATCAAGTTCTGAAGAATCTAATAAGCCAACAGAGGAAAAAGTGGTTGGTGAGAAAAGAGGAAGAGAGAAAGAAGAGAGTGAACAGGAAAAGAATGAAGAATTTAAGAAGACCAAGAAGGAGGAGGAGGAGGTAGTGGCAGTTTCGCCCACCGGCGGGGTTGTTTCTTCTTCTCCGTCTTCTTCTTCTGCGACAGTTGGTCCGTTAACGCCGTCATGTTGGAATGGGTTTTGGGATACAGAGGTGGCCAACACTATTTTCAGTGTTCCTCCGTTATCGCCGTTATCTCCTCCAATGATGGTTGTGAGGTAG 753 0.4648 MSMESLASSFSQEHGPINQSFFSGCLPYYQTPSSSSTVMASKSPKSSNLSNRKPSINITIPPMGLTRMSSSMTTSSDVVAENNDKHYRGVRRRPWGKFAAEIRDPNRKGSRVWLGTFDTAMEAAKAYDRAAFKMRGSKAILNFPLEIESSSEESNKPTEEKVVGEKRGREKEESEQEKNEEFKKTKKEEEEVVAVSPTGGVVSSSPSSSSATVGPLTPSCWNGFWDTEVANTIFSVPPLSPLSPPMMVVR 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco01g1238 250 PANTHER DNA-BINDING DOMAIN 47 187 IPR044808 GO:0003700|GO:0009873
Acco01g1238 250 FunFam Ethylene-responsive transcription factor 2 85 146 - -
Acco01g1238 250 MobiDBLite consensus disorder prediction 198 215 - -
Acco01g1238 250 Pfam AP2 domain 86 136 IPR001471 GO:0003700|GO:0006355
Acco01g1238 250 ProSiteProfiles AP2/ERF domain profile. 86 144 IPR001471 GO:0003700|GO:0006355
Acco01g1238 250 MobiDBLite consensus disorder prediction 152 193 - -
Acco01g1238 250 MobiDBLite consensus disorder prediction 149 215 - -
Acco01g1238 250 CDD AP2 85 144 IPR001471 GO:0003700|GO:0006355
Acco01g1238 250 PRINTS Ethylene responsive element binding protein signature 110 126 IPR001471 GO:0003700|GO:0006355
Acco01g1238 250 PRINTS Ethylene responsive element binding protein signature 87 98 IPR001471 GO:0003700|GO:0006355
Acco01g1238 250 SMART rav1_2 86 150 IPR001471 GO:0003700|GO:0006355
Acco01g1238 250 Gene3D AP2/ERF domain 85 146 IPR036955 GO:0003700|GO:0006355
Acco01g1238 250 SUPERFAMILY DNA-binding domain 86 146 IPR016177 GO:0003677
Acco01g1238 250 MobiDBLite consensus disorder prediction 31 64 - -
Acco01g1238 250 Coils Coil 171 192 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco01g1238 Acco-ChrAcco01 19897155 19897907 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco01g1238 46 241 AP2-EREBP Transcription Factor Family AT5G51190 48.241 2.89e-54 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Acco01g1238 AP2 8.3e-16 CL0081