Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco01g1235 ATGAGTAAGTTTCCTAGTTTGGTAATTCTCAGACTCATCAATCTCAAGAGAGATGGGGCCAACGGAAGAAATGTTTCTATAAAATGGATCCTTCATTCATGGCGCTGGCATCTTATCTTCCAACTAGTCAAGAGAGATTGCAGGCTCCTGCAGCTACATAGGCCTGTCCTCTGTTATGAACAAACAGATTTTATGATCCTATACATGGACCGGCTAACACAATTCTTTTTGTTTTTAATGGCTGTTCACCAATTCATATCAGGAGTAACTTCAGTAGAGTTTACAGTGATTAACAAATGCAACTACACAGTATGGCCAGGCATTTCTTCAGCAGCTGGCAATAATGATAATCCATTATCAACCACAGGTTTTGTTCTTAAAACAGGTGAGTCTAGGATAATCTCTGTGCCCACTTCTTGGAGTGGCCGCTTTTGGGGTCGGACTCAATGTACACAAGGCTCCACCGAAGGAAACTTCTCTTGTCTCACCGGCGACTGTGGCTCTGGGAAGCTCGAATGCCAAGGCAGGGTGGGCACACTGCCTGTGACATTGATAGAATTCTCTGTAGGACAAACCCAAGGGCTTGATTTCTATAACGTGAGCTTGGTAGATGGATTCAATGTGCCTGTAGCTGTTGTTCCTCGCGGCGGTTGTGGATCCTGCAAGAGCACATATTGTCTGGCAAATATGATCATCCTATGCCCTTCAGAACTAAGGCTAATGAACAAAGATGGAAAAGTGGTGGCGTGCAAGGGCCCATGTGAGGCAGATGGATCATCACAAACTTGTGGGGACAACTCCTCCGCCCCGTCCTCTTATGCACAACTATTCAAGAGCGTTTGCCAACATGCCTATAGCTATCCTCAAGATTATCAGCTAAGCCCATTCACTTGTGAAGCCAATTCAGAATTTGATAAGAAGAGGCATAGGACATTCATAATTATCATTATTGCAATAATAGCAATCATCATTATCAGTGTCGCTTGTGCATGCTTCTTATGGAAATGGAAGGCAAAACATTCAGGAAAATGGAGTAGCAAACAGTTCTTGTTAAAAAGGCATGGTTCAAATGTAGACAAAACAAGTGGCAATATTATACGACAATTGTCAGAAGTTAAATTCCAGGAGTTATTGGTTTATAATTTTGAAAAAATTGCAATGGCCACAAACAACTTTCAATTGACTAATAAACTTGGGCAAGGTGGTTTCGGTCCAGTCTATAAGGGAACATTACAAGATGGTCAGGATATAGCAGTTAAAAGACTATCAAGAGCATCTGGACAAGGACAAGAGGAATTTGTGAATGAAATGGTTGTCATTTCTAGGCTTCAACATCGTAATCTTGTAAAGCTTTTAGGTTGCTGTATTGAAAGAGAAGAAAAGATGTTGATATATGAATACATGCCAAATAAAAGTTTGGATGCATTTATTTTTGATCCACCAAAACGTAAGCTTCTAGAATGGGGAAAGCGCTTTGTCATAATCGAAGGAGTAGCTAGAGGAGTACTTTATCTTCACAGGGACTCTAGAGTGAAAATTATACATAGAGACCTAAAAGTAAGTAATATCTTGCTAGATGAGAACCTAATTCCAAAAATATCAGATTTTGGTATGGCAAGAATTTTCAAAGGAAGTGAAGATTATGCTAACACAAAAAGAGTTGTTGGAACCTATGGCTATATGTCTCCCGAATATGCAATGGAAGGATTATTTTCAGAGAAATCAGATGTGTTTAGCTTTGGAGTTATACTATTAGAGATTATAAGTGGAAGAAAAGGCTCAAGCTTTTATAACAACGAGCACTCTCTAAGCCTTTTAGGATTTGCATGGAAATTATGGAATGAAGAAAACATTGTACAACTAATAGATCCTGAAATATCATATCAAAACTTGGAGAAGGATATATTGAGGTGCATACACATAGGACTTCTATGTGTACAAGACCTAGCGATAGAGAGACCAAGTATGAGCACTGTAGTTTCTATGCTTAACAGTGATATTGTCAATCTTCCTCCTCCAAGGCAACCTGCATTCATCCAATGGCAAAGTATATTGAATCAATTGAACCCAGAAGAAAATCAAAGATTATTTTCCAACAACGAAGTTAGTGATAGTGACATACAGGGTAGATAG 2133 0.3929 MSKFPSLVILRLINLKRDGANGRNVSIKWILHSWRWHLIFQLVKRDCRLLQLHRPVLCYEQTDFMILYMDRLTQFFLFLMAVHQFISGVTSVEFTVINKCNYTVWPGISSAAGNNDNPLSTTGFVLKTGESRIISVPTSWSGRFWGRTQCTQGSTEGNFSCLTGDCGSGKLECQGRVGTLPVTLIEFSVGQTQGLDFYNVSLVDGFNVPVAVVPRGGCGSCKSTYCLANMIILCPSELRLMNKDGKVVACKGPCEADGSSQTCGDNSSAPSSYAQLFKSVCQHAYSYPQDYQLSPFTCEANSEFDKKRHRTFIIIIIAIIAIIIISVACACFLWKWKAKHSGKWSSKQFLLKRHGSNVDKTSGNIIRQLSEVKFQELLVYNFEKIAMATNNFQLTNKLGQGGFGPVYKGTLQDGQDIAVKRLSRASGQGQEEFVNEMVVISRLQHRNLVKLLGCCIEREEKMLIYEYMPNKSLDAFIFDPPKRKLLEWGKRFVIIEGVARGVLYLHRDSRVKIIHRDLKVSNILLDENLIPKISDFGMARIFKGSEDYANTKRVVGTYGYMSPEYAMEGLFSEKSDVFSFGVILLEIISGRKGSSFYNNEHSLSLLGFAWKLWNEENIVQLIDPEISYQNLEKDILRCIHIGLLCVQDLAIERPSMSTVVSMLNSDIVNLPPPRQPAFIQWQSILNQLNPEENQRLFSNNEVSDSDIQGR 710
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco01g1235 710 SMART serkin_6 392 668 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco01g1235 710 SUPERFAMILY Protein kinase-like (PK-like) 377 688 IPR011009 -
Acco01g1235 710 FunFam receptor-like serine/threonine-protein kinase SD1-8 366 467 - -
Acco01g1235 710 CDD TLP-PA 93 305 - -
Acco01g1235 710 CDD STKc_IRAK 398 664 - -
Acco01g1235 710 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 275 687 - -
Acco01g1235 710 Gene3D Thaumatin 92 307 IPR037176 -
Acco01g1235 710 PRINTS Pathogenesis-related protein signature 93 105 IPR001938 -
Acco01g1235 710 PRINTS Pathogenesis-related protein signature 143 154 IPR001938 -
Acco01g1235 710 PRINTS Pathogenesis-related protein signature 196 212 IPR001938 -
Acco01g1235 710 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 468 671 - -
Acco01g1235 710 SMART tha2 94 300 IPR001938 -
Acco01g1235 710 ProSitePatterns Serine/Threonine protein kinases active-site signature. 513 525 IPR008271 GO:0004672|GO:0006468
Acco01g1235 710 Pfam Protein tyrosine and serine/threonine kinase 393 662 IPR001245 GO:0004672|GO:0006468
Acco01g1235 710 Pfam Thaumatin family 98 304 IPR001938 -
Acco01g1235 710 Gene3D Transferase(Phosphotransferase) domain 1 468 669 - -
Acco01g1235 710 Gene3D Phosphorylase Kinase; domain 1 355 467 - -
Acco01g1235 710 ProSitePatterns Thaumatin family signature. 157 173 IPR017949 -
Acco01g1235 710 ProSiteProfiles Thaumatin family profile. 91 304 IPR001938 -
Acco01g1235 710 FunFam THAUMATIN-LIKE PROTEIN 1 92 307 - -
Acco01g1235 710 ProSiteProfiles Protein kinase domain profile. 392 685 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco01g1235 710 SUPERFAMILY Osmotin, thaumatin-like protein 93 303 IPR037176 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco01g1235 Acco-ChrAcco01 19742632 19747054 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco01g1235 76 699 Receptor kinase-like Gene Family AT5G38280 35.843 3.57e-124 383
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Acco01g1235 PK_Tyr_Ser-Thr 4.7e-49 CL0016