Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco01g1186 ATGGCGCTTCGTGGTACAACTTATTATAATTCATGTTTTCGAGTGATCATATTGATGCTTCTCTTCTTTTATGGCGTTAATGTTCCCTTCTCTTTTGGTTCTTCAGAACCAGAATTGCTGCTCAAGTTCAGGCACTCTTTGCAATACGAAAACGACACTGCGTTTTCCACTTGGAATATGTCTATCTCGCCGCCGTGTTCCGGTGATAGTCCTAATTGGGTCGGAGTTCTCTGTACAGAAGAAGGCAAAATCTCTGGATTGATACTTGAGAATATGGGACTTAAAGGTCTCATTGATGTGGACGCTCTTCAACAGTTGCCTAATCTTAGAACCTTAAGTTTCAATAACAATAATTTCAATATTACTTGGCCAGAATTGAACAAGCTCTATCCTCTCAAGACATTTTATCTTTCGAATAATAAGTTTTATGGAGAGATTCCTGCTCGGAGTTTTCAAAGTATGAATTGGTTGAAGAAAGTTCATTTGGCGAATAATCAGTTCTCTGGTGAAATTCCCACTTCATTGGCCATGTTACCTAGGCTTATGGAGCTAAGATTAGAGGGAAACAAATTCAGTGGCCGAGTCCCCAACTTTCTGCAGAAGAACTTGAAATCTTTTAGTGTGGCCCACAATCAGTTGCAGGGTAAAATACCTGCCAGCCTTAGTGCACTTCCAGTCTCATCCTTCGCCGGCAATGAAGGCTTATGTGGGACTCCATTGAGTGCATGTCATTCCTTCAAGAGCCCCTCAATCATCACTGTTGTGTTGATTGCCATAGCGGTGGGCGTGGCAGTAATGATCATAGGATTACTAATCTTTCTCTTTCGTTGGAGAAAAAGACGGCGAACGGCAGTGTCGTTGGAGATTCCAGAATCAAATCAGATAAGGAGGACTCGTTTCAGGGAAGCAGATGAAGTGAGTAATCACTCAAGAACATCACAGGTTTCCAACCACAGCAGAAGATTAGAGAACATAAAGTTGTGCTTTGTAAGAAAAGACAGAGAGAAATTTGATTTTCATGAGTTACTAAGAGCCTCAGCTGAAATTTTGGGCAGTGGCAGCTTCAGTTCTTCGTATAAGGCTGCTCTGTTGAATGGCTCAATGATGGTGGTGAAGAGGTTTCAGAAAATGAACAATGTTGGGAAGGAAGAGTTTCAGGAACACATGAGGAGGTTAGGAAGGTTGGATCACCCTAATTTGCTTTCTCTGGTGGCTTACTATTACAGAAAGGAGGAGAAACTGTTGGTTACAGACTATGTTCAAAATGGTAGCTTGGCAGTTCGCCTTCATGGACCCCATGATGTAGGAAAGGCAGGCCTTGATTGGCCAACACGATTGAAGATTGTGAAAGGAATCACAAAATGTCTTGAATATCTCTACAAGGAACTACCAGGCCTAATTGCACCCCATGGGCATCTCAAATCTTCAAATGTTCTCCTTACTCAGTCTAATGAGCCCCTTTTAACAGACTACGGCTTAGTTCCAGTAATAAACCAAGATCATGCTCAGGACATGATGGTCATTTATCAGTCCCCTGAGTACACACAAGAGGGTCAGATTACAAAGAAGACCGATGTATGGAGTCTTGGGGTACTAATTTTGGAGATATTAAGTGGGAGATGTTCAGGTAAAGCAGAGATGGATTTGGTTAGTTGGGTGAAATGTGTGGAGCCAGAAGATTGGAGCAATGAGGTTTTGGATAAAGAAATGGGAGGAACAAGGAACAGTGAAGGGGAGATATTGAAGCTTTTGAGGATTGCGTTGTGCTGTTGTGAAGAAGATGTCAGTAACAGACTAGATTTGAAAGAAGTGGTTGAGAAAATTCAAGAAGTGAGGGAGAGGGAACATGATGATGATTTCTATTCATATGCTAGTGAAGCTGAAACTCATCACTCTTCAGCCACAGTGTCTGATGAAATCAATTTCCCCTTTAATGCTTGA 1941 0.4183 MALRGTTYYNSCFRVIILMLLFFYGVNVPFSFGSSEPELLLKFRHSLQYENDTAFSTWNMSISPPCSGDSPNWVGVLCTEEGKISGLILENMGLKGLIDVDALQQLPNLRTLSFNNNNFNITWPELNKLYPLKTFYLSNNKFYGEIPARSFQSMNWLKKVHLANNQFSGEIPTSLAMLPRLMELRLEGNKFSGRVPNFLQKNLKSFSVAHNQLQGKIPASLSALPVSSFAGNEGLCGTPLSACHSFKSPSIITVVLIAIAVGVAVMIIGLLIFLFRWRKRRRTAVSLEIPESNQIRRTRFREADEVSNHSRTSQVSNHSRRLENIKLCFVRKDREKFDFHELLRASAEILGSGSFSSSYKAALLNGSMMVVKRFQKMNNVGKEEFQEHMRRLGRLDHPNLLSLVAYYYRKEEKLLVTDYVQNGSLAVRLHGPHDVGKAGLDWPTRLKIVKGITKCLEYLYKELPGLIAPHGHLKSSNVLLTQSNEPLLTDYGLVPVINQDHAQDMMVIYQSPEYTQEGQITKKTDVWSLGVLILEILSGRCSGKAEMDLVSWVKCVEPEDWSNEVLDKEMGGTRNSEGEILKLLRIALCCCEEDVSNRLDLKEVVEKIQEVREREHDDDFYSYASEAETHHSSATVSDEINFPFNA 646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco01g1186 646 Gene3D Ribonuclease Inhibitor 201 244 IPR032675 -
Acco01g1186 646 FunFam Nuclear pore complex protein NUP107 33 197 - -
Acco01g1186 646 Gene3D Phosphorylase Kinase; domain 1 308 419 - -
Acco01g1186 646 SUPERFAMILY Protein kinase-like (PK-like) 348 610 IPR011009 -
Acco01g1186 646 Pfam Leucine rich repeat 132 191 IPR001611 GO:0005515
Acco01g1186 646 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 23 614 IPR046959 -
Acco01g1186 646 Gene3D Transferase(Phosphotransferase) domain 1 420 632 - -
Acco01g1186 646 ProSiteProfiles Protein kinase domain profile. 344 621 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco01g1186 646 Pfam Protein kinase domain 347 606 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco01g1186 646 CDD TM_EGFR-like 253 282 - -
Acco01g1186 646 SUPERFAMILY L domain-like 62 225 - -
Acco01g1186 646 Gene3D Ribonuclease Inhibitor 35 200 IPR032675 -
Acco01g1186 646 Pfam Leucine rich repeat N-terminal domain 36 78 IPR013210 -
Acco01g1186 646 FunFam pollen receptor-like kinase 1 312 419 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco01g1186 Acco-ChrAcco01 17975837 17979440 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco01g1186 1 642 Receptor kinase-like Gene Family AT5G35390 49.110 0.0 611
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Acco01g1186 Pkinase 5.3e-29 CL0016