Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco01g1135 ATGGGATTTCAAAGAAAAACGGCTTGTCAGCTTCAGGCCCTTCATATTTTTTTTGAAGGGGAGAAGTATCCAACACAGAGAGAAATGGAAGACTATGCGGGTGCTTTGGGATTGACATATAAGCAAGTTCAAGATTGGTTTGTTGAGCAAAGGAGGAGAAAGAAGAAGAAGCAAAATGGAGTGTTAGTACCGCCATGTTCTTCTTCTGAAGCCAATTCTCCTTCACCAGTAGGATACAATGCAGTTACAAATAGAAATGTTGAGAAGCAGAAAAAGCAGAAAAGTCATCAGGAGTTGCTTACAGCAGACTACATTCTAAAAAAGGTTTTCCGGAAGGGTGGCCCTTCTCTAGATGAGGAATTTGATTCTCTTCCTACAGGTCTCAACAATTCCTTTTCTGTTGGTCAAGAGGACCAAGGACCAAATAAAAGGAGAAAGGTTTCAGAGAGTGCAATTGGAAGTCACCCTGTATCAAATAAGAAAGCACCATTGAGAAAACATGGTATTGGAAAAGGTTTAATGACAGTATGGAGGGCTACTAATCCGGATGCTGGAGATGTTCCTATTGGCTTTGGTCTTGGTGATAAGCCAAGGAAAACACTAACCAATGCTGGAAGACAAAAAACTAAACTACCGAATGTGAGAAATAATATACAAGAAAAGAGGAAGGCTTTCATGCAAAGAAGAGTGGATGTGAGTCAGAATCAACCACAGAAGGAAAAATGTGAACTTGTTTTGGGTAGATTTATAACTGTGGAGGAACTTGATCGGACGTCATTTTTAATTGATGATGAAGAGTTAGAGATGAGAGAGTTGCAAGCAGGGCCATCTACGCATATGTGTTCTGATCATCTTGCTTCCAGTGGAATTCTTGGCTGCTCTCTTTGTAAAGATGTGCTGTCTAAGTTCCCCCCAGATACTGTTAAGATGAAGAAACCCATCTGTTCACAACCTTGGGACTCCTCTCCAGAAACTGTCAAGAAACTTTTTAAGGTATTCCATTTTCTTTATACATATGCTACTGTTGTTAATATTTGCCCCTTCACTCTTGATGAGTTTGCTCAAGCGTTTCATGATAAGGATTCAATGTTGCTTGGAAAGATTCATGTGGCCCTTCTTACACTTCTTCTATCTGACATTGAAGTGGAACTTACCAGTGGATTTCTGCGTCATTTAAATAAATCATGCAATTTTCTTGCGTTGCTTCACTCGGTTGAAAATCAAGAATATTCTCTGGACTTCTGGAAAAGATCTCTTAACCCCCTTACATGGATAGAAATACTGCGACAAGTTTTGGTTGCTGCTGGTTTTGGTTCGAAACAAGGTTCTTTGCGAAGAGAAGTGCTTAACAAGAATTTGAATTTTATATTTGATCCGCCTCAAACTGATCATGTGATATCCTTAGTTATTGAAAAGTGA 1419 0.3939 MGFQRKTACQLQALHIFFEGEKYPTQREMEDYAGALGLTYKQVQDWFVEQRRRKKKKQNGVLVPPCSSSEANSPSPVGYNAVTNRNVEKQKKQKSHQELLTADYILKKVFRKGGPSLDEEFDSLPTGLNNSFSVGQEDQGPNKRRKVSESAIGSHPVSNKKAPLRKHGIGKGLMTVWRATNPDAGDVPIGFGLGDKPRKTLTNAGRQKTKLPNVRNNIQEKRKAFMQRRVDVSQNQPQKEKCELVLGRFITVEELDRTSFLIDDEELEMRELQAGPSTHMCSDHLASSGILGCSLCKDVLSKFPPDTVKMKKPICSQPWDSSPETVKKLFKVFHFLYTYATVVNICPFTLDEFAQAFHDKDSMLLGKIHVALLTLLLSDIEVELTSGFLRHLNKSCNFLALLHSVENQEYSLDFWKRSLNPLTWIEILRQVLVAAGFGSKQGSLRREVLNKNLNFIFDPPQTDHVISLVIEK 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco01g1135 472 PANTHER HOMEOBOX-DDT DOMAIN PROTEIN RLT2 4 58 IPR044977 GO:0006357
Acco01g1135 472 CDD homeodomain 4 58 IPR001356 GO:0003677
Acco01g1135 472 MobiDBLite consensus disorder prediction 123 138 - -
Acco01g1135 472 MobiDBLite consensus disorder prediction 62 81 - -
Acco01g1135 472 Gene3D - 2 70 - -
Acco01g1135 472 SMART testlast3 323 382 IPR018501 -
Acco01g1135 472 MobiDBLite consensus disorder prediction 117 166 - -
Acco01g1135 472 ProSiteProfiles DDT domain profile. 323 382 IPR018501 -
Acco01g1135 472 Pfam DDT domain 324 379 IPR018501 -
Acco01g1135 472 Pfam Homeodomain 7 56 IPR001356 GO:0003677
Acco01g1135 472 MobiDBLite consensus disorder prediction 57 81 - -
Acco01g1135 472 SUPERFAMILY Homeodomain-like 5 65 IPR009057 -
Acco01g1135 472 ProSiteProfiles 'Homeobox' domain profile. 10 57 IPR001356 GO:0003677
Acco01g1135 472 SMART HOX_1 4 61 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco01g1135 Acco-ChrAcco01 16767829 16772347 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco01g1135 225 440 Homeobox Transcription Factor Family AT1G28420 37.657 5.27e-36 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Acco01g1135 DDT 1.3e-10 No_clan