Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco01g1109 ATGGTCGTGAGCAACCCAGTGGGGGGGAGACACGCTAACCTAACCACGGTTAAAACTGCCTTCTTCTTGCTGTTTATAAGTGACCCTAACCATGCCGGAGTTTCTGTAAGCATACAAAATTTCCCAAAGCAATCAAAGGTTATGATGCTCGGTGAGCCCCATCACGCAAATCCGACTGTCCACGTTCCTCCTTGGGCCCTCCACCTTGATGATTTGACCTTGGATATTTGTTCTGCGTACCCGGTCAGCGGTGTTTCCGTCAACTCCGACGGTAATGCCAGCACAGGCGATTACTCGCCGTTTTACGTGCAAGAGGCTTTATCGGCGCTGCAGCGTTATCTACCCTCCAACGACGCTGACATCGACTCGGACTCTGATGCTCCTGGTCGGGACTCTGACGCTCCGGTCGATACCTACTCCTGCGATCATTTCCGTATGTACGAGTTCAAGGTGAGGAAGTGCCCTCGTGGCAGGTCACATGACTGGACTGAATGTCCTTTTTCTCATCCCGGCGAGAAGGCTCGCCGGAGGGATCCGAGGAAGATTCTCTATTCGGGCACTGCATGCCCTGATTTTCGCAAAGGGAGCTGTAAGAAGGGGGAGTCTTGTGAGTTCGCTCATGGAGTATTTGAGTGCTGGCTTCACCCTTCTCGCTACCGTACGCAGCCGTGTAAGGACGGTACAAGCTGCAGGAGAAGGGTGTGCTTTTTCGCTCACACGCCGGAGCAACTCAGGATTCTTCCACCTCAGAGTCCAAGGAGTCCCAACTCAGCAGATTTATACGACGGCTCTCCGTTGCGGCAGGCGATGGAGTTTTCTTGTTCTAAAACTCTGCCGTTCATGTCATCTCCAACTTCGATATCACCCCCGGTTAGTTCTCCGACGGAATCTCCTCCTGTGTCTCCGATGGCTCAGTCCATGAGCCGTTCTGTTTGTTCGAGCTCCATCAATGAGACGGTGGCTTCTCTGCGTAATTTGCAGCTTGGTAAGGCCAAGTCTTTGTCCTTATCCTCTTCTTGGAATGTTCCTATGGGGTCTCCTGGCTTCGGGTCTCCGAGGGGATCTATGCTCCGACCTGGATTCTGCAGCCTCCCCACCACCCCTACGCAGGTGCCAACTTGCACCGACGGCAGCTATTTTGATATTTGGGATCAGGGTTGCGAGGAGGAGCCAGCGATGGAGCGGGTAGAGTCCGGTCGGAACATAAGGGCAAAGATGTTCGAGAAATTGAGCAAAGAGAATTCGCTGGACCGGTCGGATCCGGGTTCTTCAGGTGGGGCTCCAGATGTCGGATGGATTTCGGAGCTGGTGAAGTAA 1317 0.5353 MVVSNPVGGRHANLTTVKTAFFLLFISDPNHAGVSVSIQNFPKQSKVMMLGEPHHANPTVHVPPWALHLDDLTLDICSAYPVSGVSVNSDGNASTGDYSPFYVQEALSALQRYLPSNDADIDSDSDAPGRDSDAPVDTYSCDHFRMYEFKVRKCPRGRSHDWTECPFSHPGEKARRRDPRKILYSGTACPDFRKGSCKKGESCEFAHGVFECWLHPSRYRTQPCKDGTSCRRRVCFFAHTPEQLRILPPQSPRSPNSADLYDGSPLRQAMEFSCSKTLPFMSSPTSISPPVSSPTESPPVSPMAQSMSRSVCSSSINETVASLRNLQLGKAKSLSLSSSWNVPMGSPGFGSPRGSMLRPGFCSLPTTPTQVPTCTDGSYFDIWDQGCEEEPAMERVESGRNIRAKMFEKLSKENSLDRSDPGSSGGAPDVGWISELVK 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco01g1109 438 PANTHER UNKEMPT FAMILY MEMBER 81 438 IPR045234 -
Acco01g1109 438 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 188 208 IPR000571 GO:0046872
Acco01g1109 438 SUPERFAMILY CCCH zinc finger 183 212 IPR036855 GO:0046872
Acco01g1109 438 MobiDBLite consensus disorder prediction 412 438 - -
Acco01g1109 438 ProSiteProfiles Zinc finger C3H1-type profile. 183 210 IPR000571 GO:0046872
Acco01g1109 438 SMART c3hfinal6 218 241 IPR000571 GO:0046872
Acco01g1109 438 SMART c3hfinal6 183 209 IPR000571 GO:0046872
Acco01g1109 438 MobiDBLite consensus disorder prediction 282 305 - -
Acco01g1109 438 FunFam Zinc finger CCCH domain-containing protein 66 141 209 - -
Acco01g1109 438 Gene3D - 183 246 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco01g1109 Acco-ChrAcco01 15769602 15771080 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco01g1109 133 302 C2H2 Transcription Factor Family AT5G12850 52.601 2.88e-53 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Acco01g1109 zf-CCCH 5.2e-06 CL0537