Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco01g1100 ATGACAACTCGGCAGGCAGAAACATCTTCTATACACTATCAGTGGACGTACGATGCATTCCTCAATTTTAGAGGAGAAGATACCCGTCATGGTTTCATAGGACATCTGTGTGATGCTCTTGATAAAATGGGAATTCGCACTTTGTTCGATGACAAGGAAATAAGAATCGGGGATGAAATTACACCAACGCTTCTCAAAGCAATCCAAGAATCTAGAATGGCCATTACAGTATTTTCTGAGGAGTATGCTTCCTCAACGTTCTGCTTGGACGAACTAGTCCACATCCATCAATGTATCAATGGAAATGGTCGACTGGTTTGGCCAATTTTTTATAATGTGGAGCCTTCTGAAGTAAGACACCAAAGAGGGAAATATGGAGAAGCGCTTGTTACACATGAACAAAACTCAAGGGCTGATGAAGAAAAGATAAAAAAATGGAAGCATGCACTACGTGAAGTAGCTAATCTTAAGGGGTCATCATGTGATACAAGGAAAGATTATGAACGTGAAGTCATTAAAGAGATTGTGAACCACATCGTTAGGATAATCAAAGGAAGGGACCCCCTCGATGTTGCCAAATATCCGGTTGGTTTAACTTCTCGTGTTGAAAAAATAAACTCTCTATTGCAACTTGGGTCAAATGATAAGGTCTTCATGATAGGAATTTGTGGAACTGGAGGAATGGGGAAAACAACAATAGCACGTGCTGTGTATAATGCAATTGCTGATCATTTTGATTATTTGTGCTTTCTCGATGATATCAAAGGAGAATCTGCGAAGCATGGACTACAACAACAGCAAGCCACAATGCTTTCAAGAATTTCAGGTCTGAAGGAAGTAATTGAAGACGTTGATGAAGGAGTTAAACTCATAAAACGAGTACTCAAGGGAAAGAAAACTCTTTTGATTCTTGATAATGTAGATGAACGAAAGCAATTGCAAAAGTTGGCTGGGGAATGTGAATGGTTTGGTTCTGGGAGCAGGATCATTATAACAACAAGGGATTCATATTTACTTAAGTTTCATGGGCCTAAAAGAATATATGACATGGAGGGATTAAATTATGAAGAATCTCTTGAATTGTTAAGTTGGATGGCCTTTGGAAAGAAGCAAGTTGATGATCCAAGATACAAGGATGTTGTGGAGCATGTGATTCGTTATGCCAGCGGTCTTCCCTTAGCCCTTGAATTAATTGGCTCTGACTTGCATGGCAAGGATGTGAAGAACTAA 1230 0.3943 MTTRQAETSSIHYQWTYDAFLNFRGEDTRHGFIGHLCDALDKMGIRTLFDDKEIRIGDEITPTLLKAIQESRMAITVFSEEYASSTFCLDELVHIHQCINGNGRLVWPIFYNVEPSEVRHQRGKYGEALVTHEQNSRADEEKIKKWKHALREVANLKGSSCDTRKDYEREVIKEIVNHIVRIIKGRDPLDVAKYPVGLTSRVEKINSLLQLGSNDKVFMIGICGTGGMGKTTIARAVYNAIADHFDYLCFLDDIKGESAKHGLQQQQATMLSRISGLKEVIEDVDEGVKLIKRVLKGKKTLLILDNVDERKQLQKLAGECEWFGSGSRIIITTRDSYLLKFHGPKRIYDMEGLNYEESLELLSWMAFGKKQVDDPRYKDVVEHVIRYASGLPLALELIGSDLHGKDVKN 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco01g1100 409 Gene3D - 352 409 IPR042197 -
Acco01g1100 409 SMART till_3 16 156 IPR000157 GO:0007165
Acco01g1100 409 Pfam NB-ARC domain 201 407 IPR002182 GO:0043531
Acco01g1100 409 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 17 405 IPR044974 GO:0006952
Acco01g1100 409 ProSiteProfiles TIR domain profile. 15 183 IPR000157 GO:0007165
Acco01g1100 409 Pfam TIR domain 17 182 IPR000157 GO:0007165
Acco01g1100 409 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 179 407 IPR027417 -
Acco01g1100 409 Gene3D - 11 184 IPR035897 -
Acco01g1100 409 PRINTS Disease resistance protein signature 388 402 - -
Acco01g1100 409 PRINTS Disease resistance protein signature 219 234 - -
Acco01g1100 409 PRINTS Disease resistance protein signature 294 308 - -
Acco01g1100 409 FunFam Disease resistance protein (TIR-NBS-LRR class) 13 185 - -
Acco01g1100 409 Gene3D - 185 343 IPR027417 -
Acco01g1100 409 SUPERFAMILY Toll/Interleukin receptor TIR domain 9 158 IPR035897 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco01g1100 Acco-ChrAcco01 15323070 15324459 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco01g1100 17 400 WRKY Transcription Factor Family AT4G12020 27.577 2.25e-31 125