Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco01g1089 ATGGAGAACACCTTTCTTCTCTCTTTCCTCTTCCTTCTCTTCCATTTAGCTCCAGCAAAAGCTGATCTTGGTGTTGGCATAGGTATCGGTATCGGTATCGGCATTGGCAATGGCGGTAGTGGCGGAGGCGGTGGTGGGGCTAATAATAGCCCAGGACCGTCTGGACCTTCAGTGTCAAAGATGGACATAGCTTACAAAAGTCTCCAAGCATGGAAATCAGCCATCACCGATGACCCATTAAAGATTCTTGATACTTGGACAGGTTCCAACGTTTGTTCTTATAAAGGAGTCTTCTGCTCCAATTCTTTCGTTGCTGGAATTGATCTCAACCACGCAAATCTTCAAGGAACTCTCGTTAAAGACCTATCTTTGCTCACTGATATGTCTCTTCTTCACCTTAACAGCAACAGATTCACTGGTACAATTCCCGAAACATTCAAAGACCTTTCATCTTTAAAAGAATTAGACCTTAGTAACAACCAGTTTTCTGGTGAATTCCCCACAGTTATTTTGAACATCCCAAATCTCATTTACTTGGACCTCAGATTCAACTCCTTCTCTGGTACCCTCCCAGATGAACTTTTTAGTAAAAATCTTGACGCAATATTTCTCAACAATAACCAATTCCAAGGCCAAATCCCTCAGAATCTAGCTAGTTCCTCAGCTTCTGTCGTCAACCTAGCGAACAACAAGTTCACTGGAACCATCCCAATTTCAAGTTTAGGTTTGGTGGGTACTTATAATTCTAAGCTGAAGGAGATTCTGTTCCTAAATAACCAGTTAACAGGTTGTATCCCTCAAGGAGTGGGTCTGTTCAGAGATGTGCAAGTTCTTGATGTGAGCTTTAATTCATTGGTGGGTCATTTGCCAGAAACACTATCTTGTTTGGAAGATATAGAAGTTCTTAACTTGGCTCATAACCAGCTTTCTGGGGAATTATCTGATGTGGTGTGCTCGTTGGAGAGTTTGGCGAATTTAACTGTGGCTTATAATTTTTTCAATGGGTTGAGTCAGGAATGTTCTAGGCTTTTGATTAGGAATGTGGGGTTTGATTTCTCGGATAATTGTATTCCTGGGAAGGACATGCAGAGACCTAAACCAGAATGTTCTGTGATCCCAGGTGGTAGCTTAAGTTGTCTCAGAACTCCCTTACCAAAGCCTCTTGATTGTGCTTCACTGGCAATAGTTTCATCTTCCCCTTGA 1203 0.4206 MENTFLLSFLFLLFHLAPAKADLGVGIGIGIGIGIGNGGSGGGGGGANNSPGPSGPSVSKMDIAYKSLQAWKSAITDDPLKILDTWTGSNVCSYKGVFCSNSFVAGIDLNHANLQGTLVKDLSLLTDMSLLHLNSNRFTGTIPETFKDLSSLKELDLSNNQFSGEFPTVILNIPNLIYLDLRFNSFSGTLPDELFSKNLDAIFLNNNQFQGQIPQNLASSSASVVNLANNKFTGTIPISSLGLVGTYNSKLKEILFLNNQLTGCIPQGVGLFRDVQVLDVSFNSLVGHLPETLSCLEDIEVLNLAHNQLSGELSDVVCSLESLANLTVAYNFFNGLSQECSRLLIRNVGFDFSDNCIPGKDMQRPKPECSVIPGGSLSCLRTPLPKPLDCASLAIVSSSP 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco01g1089 400 Pfam Leucine rich repeat 130 185 IPR001611 GO:0005515
Acco01g1089 400 Pfam Leucine rich repeat N-terminal domain 66 100 IPR013210 -
Acco01g1089 400 FunFam Leucine-rich repeat extensin-like protein 1 65 219 - -
Acco01g1089 400 Gene3D Ribonuclease Inhibitor 171 221 IPR032675 -
Acco01g1089 400 Gene3D Ribonuclease Inhibitor 64 170 IPR032675 -
Acco01g1089 400 PRINTS Leucine-rich repeat signature 152 165 - -
Acco01g1089 400 PRINTS Leucine-rich repeat signature 296 309 - -
Acco01g1089 400 SUPERFAMILY L domain-like 69 357 - -
Acco01g1089 400 Gene3D Ribonuclease Inhibitor 222 364 IPR032675 -
Acco01g1089 400 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 59 381 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco01g1089 Acco-ChrAcco01 15000847 15002049 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco01g1089 60 382 Leucine-rich Repeat extension Gene Families AT3G24480 50.595 8.00e-108 324