Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco01g1078 ATGTCAAATTCTCATTCTATTTGCTTCCTTCTTGTTCTTCTCTTCCTTTTGCAAAATCCTTGTGCAACATTGTGCCACACCAAGGGACTCAGACCCGGCCGGCATTATTCGGGTCTTGGGTTATCCATCAACAGGACCCAAATCCAGAATTCGGAGCAGCAATTCATGAGATGGGTTAACTTTGTTGGTAGCCTCAAGCACTCTGTGTTTAAGACTGCAAAAAACAAGCTTTCTCCTTCTTACACTCTTCACGTCTCTAAGAATCCAGCCGTAGCAGATTTTGTAACCGTTCAAGAAGCCATTGATTCTCTTCCTTCCATCAATCTCGTGAGAGTGATCATTAAGGTTCATGCAGGTGTTTACACTGAGAAAGTAAACATTCCTCCTATGAAATCCTTCATAACCATAGAAGGAGCAGGAGCAGATAACACTATAGTTCAATGGGGTGACACAGCACAAACACCAGGTCCCAGAGGACAGCCTTTAGGAACATATGGTTCTGCAACATTTGGAGTCAACTCACCTTATTTCATAGCCAAGAACATAACATTCAAAAACACAACCCCAGTTCCTGCACCAGGAGCAGTAGGGAAGCAAGCAGTGGCATTAAGAATATCAGCAGACACAGCATCATTCTACGGATGCAAATTCCTAGGAGCACAAGACACATTGTATGATCATGTGGGTAGACATTATTACAAGGATTGTTACATTGAAGGTTCAATTGATTTCATATTCGGGAACGGCCTATCTTTGTTTGAGGGATGTCACGTGCATGCAATAGCACAGAACTTAGGGGCCTTAACAGCACAAGGAAGGAGCAGCATGTTGGAGGACACAGGGTTCTCATTTGTGCACTGTAAGGTCACGGGTTCAGGAGCACTTTACCTGGGGAGGGCTTGGGGTCCTTTTTCTCGTGTGGTATTTGCTTACACTTACATGGACAATATCATCATTCCCAAGGGCTGGTACAATTGGGGTGACCCTAATCGTGAAATGACAGTATTTTATGGACAATACAAGTGTACAGGACCTGGGGCTAGCTTTGCCGGCAGAGTATCATGGTGTAGAGAACTCACCGACGATGAAGCTCAGCCTTTTATTTCCCTTAGCTTCATTGATGGCGATGAGTGGACTAAATTGTAA 1146 0.4415 MSNSHSICFLLVLLFLLQNPCATLCHTKGLRPGRHYSGLGLSINRTQIQNSEQQFMRWVNFVGSLKHSVFKTAKNKLSPSYTLHVSKNPAVADFVTVQEAIDSLPSINLVRVIIKVHAGVYTEKVNIPPMKSFITIEGAGADNTIVQWGDTAQTPGPRGQPLGTYGSATFGVNSPYFIAKNITFKNTTPVPAPGAVGKQAVALRISADTASFYGCKFLGAQDTLYDHVGRHYYKDCYIEGSIDFIFGNGLSLFEGCHVHAIAQNLGALTAQGRSSMLEDTGFSFVHCKVTGSGALYLGRAWGPFSRVVFAYTYMDNIIIPKGWYNWGDPNREMTVFYGQYKCTGPGASFAGRVSWCRELTDDEAQPFISLSFIDGDEWTKL 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco01g1078 381 Gene3D - 78 381 IPR012334 -
Acco01g1078 381 FunFam Pectinesterase 79 381 - -
Acco01g1078 381 Pfam Pectinesterase 92 376 IPR000070 GO:0030599|GO:0042545
Acco01g1078 381 SUPERFAMILY Pectin lyase-like 79 380 IPR011050 -
Acco01g1078 381 ProSitePatterns Pectinesterase signature 2. 238 247 IPR033131 -
Acco01g1078 381 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 71 379 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco01g1078 Acco-ChrAcco01 14764985 14769541 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco01g1078 1 378 Carbohydrate Esterase AT5G47500 44.063 1.21e-103 308