Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco01g1073 ATGGTGAGGCATGTTCGAGGATTGTACACTGTAAGCACATCATCTATATCTTCTTCCTCTTTGCGCAATAATTTGGTGAGTAAAACAAGTAAGAACTTGAAGGGAAAAGAAAAACCCTTATTTCTTGCCAAAATGCCATATTACTTGTTCTCCATTTTCTTCTTCTTTGTACTGAGTGATGCTGAGACTAATAATAAGTCTCAGCTGTATGATCAAGAACATACAGTCCTACTTAACTTGAAACAACACCTTTATCCATTCCTCAATCAGTGGGTCCCACCCAATTCCTCTCATTGTTCTTGGCCTTGGATCGACTGCACCGATGGCTCTGTCACAAAACTAGATTTTGTTGACATGAACATCACCAAAACCATACCTCCTTTCATCTGTGACCTCAAAAATCTCACCTTTATTGATTTTCAGTTAAATTATTTTTCTGGGGAGTTCCCAAAATTTCTCTATAATTGCTCCAAGCTTGAGTACCTTGACCTCTCCCAGAACAACTTTGTGGGTCCGATTCCAAACGACGTTGACCGATTGGCCAACCTGCGTTTCCTTAATCTTGCCGCCAACTATTTCTCCGGCGACATTCCGGCGAGCATAGGAAGGTTGAAGGAGCTGAGAAATCTCCAACTTTACTCCTGTGGATTTAATGGCAGTATCCCAGATGAAATAGGCGACTTGTCCAATCTTGAATTCTTAGACCTGCGCCTAAACACCAATCTTCCTCCTACACAGTTGCCGGCGAGCTTCACCAAGTTAAAAAAAGTGAAGACCTTTTGGATGAAATCCATGAATTTGATTGGGAAAATTCCAGAAACTATTGGGGAGATGGCGAGTTTGGAGGAATTGGATTTATCGGAGAATGGCTTAAACGGGCAAATCCCCAGTAGTTTGTTTGCTCTGAAGAATCTAAGCATATTGTATCTTTGGAACAATAGACTATCTGGGGAAATACCTACAGAAATTGAAGCTCTGAATCTGACCGTACTGGATGTTTCAAAGAATTTTCTTACTGGAAAAATCCCAGATGGTTTAGGGAAGCTCAAAAAGCTAACAGGTTTGAGTCTGCAGATGAATCAACTATCAGGAGAGATACCAGAAAGCCTTGCTCATCTGCCAGCTCTAGTGGATTTCGTGGTTTTTGAAAACAATCTATCAGGTACTCTGCCTCGTTACTTTGGTCGTTATTCGCCACTCGAAACCTTTCAGGTTGCAACCAATAGATTGACAGGAAATTTGCCAGAGGATTTATGTTACAATGGCAAGTTAGTTGGAGTAAGTGCTTATGACAACGATCTAAGTGGGGAGCTGTCAGAATCATTAGGAAGCTGCAACAATAACCTGAAATACTTGTTTCTTCAGAATAATAGTTTTTCAGGCAAAATCCCCGCAGGCCTTTGGACGTCATATCATTTGGTGACTTTAATGATCGACAGCAACAAGTTTACCGGTGAGCTACCTCAAAGATTGGCTTGGAATCTTTCAAGTTTGATCATAAGCAACAATCAATTCTCCGGTGGAATACCAGTAGGAGTATCTACCTGGAAGAATCTGGTCAAGTTTGAAGCTCGTAAGAATCTCTTCAATGGGAGTATTCCACAAGAGCTAACCACTCTTCCTAAGCTAACAAATTTGTTTCTTGATCAAAACCAGTTAACGGGTCCACTTCCATCAGAAATCATATCTTGGAAATCTCTCAATGCTCTAATTTTGAGCCACAATCAACTCTCTGGACCAATCCCAGATTCTATTGATCGTTTGCCCAACCTATCACAACTAGACCTGTCAAATAACCAGCTCTCCGGTCATATTCCACCTCAACTTGGTAAATTGTCAATGGCCCTCACAAACCTCAATCTCTCCTCCAATCTTTTCGAAGGGAAGATTCCTAGTGAATTTGGAAGTCCTGCCTATTCTGATAGCTTTCTAAACAATTCTGGCCTCTGTGCTGATACCAAAACGCTAAACCTTCCCTTGTGCAATCCCGGTTCTGACCTTCAAATTGAAAGGTTAAGAAAGAGATCATCTGCATCTCTTACTTTGGTCATATTTCTGGTGATTGTGGCCTCCTTAGCAGCTTTCTCGGTTTTACTCTTGATTGTTAGATTATACAAATCAAGAAAGCAAGAATTGGATAATTCATGGAAGTTGACTTCCTTCCAGAGGGTAAGTTTCTCAGAAATGAACATTGTGTCATCTTTGACAGATCATAATATTATAGGCAGAGGTGGGTACGGTATGGTATACCAAGTCCCCGTAGATGGTTTAGGCTACGTCGCTGTCAAGAAGATATTCAGTAACAAGAAGTGGGAGCAGAAACTTGAGGATGCATTCCTAGCAGAAGTTAAGATTTTGAGCAACATTCGTCACAACAATATTGTGAAGCTGTTGTGTTGCATGTCAAATGATGATTCCCTACTTCTTGTATATGAATATCTAGAAAACAATAGCCTTGATCGCTGGCTGATCAAGAAGAATAGGTTAAACCATAATTTTGTCCTCGATTGGCCGAAAAGATTGCAGATAGCCATTGGAGCTGCACAAGGTCTGACCTATATGCACCATGATTGCCCACATCCCGTTGTTCATCGTGATATTAAAACAAGTAACATCCTTTTGGATTCTGAATTCAATGCAAAAGTTGCAGACTTTGGTCTAGCAAGAATATTGATCAAGCCAAGCGAACTCACCATGTCAGGTGTAGCTGGATCATTCGGCTATATTGCTCCAGAATATATTCAAACAACGAAAATCAATGAAAAGATCGATGTGTATAGTTTTGGAGTGGTGTTGCTGGAACTTACAACTGGGAAGGAAGCGAACCGTGGAGATGAACACTCGTCTCTTGCAGAATGGGCATGGCGACATGTGCAGCTGGGCGGAGATGTAGAGGAAGTTCTAGACAAGGAAATTATGGAAGCATGCTATATGGATGAAATATGCTGTGTCTTCAAACTTGGGGTGATGTGTACTGCAATAGTGCCAACTAGTAGGCCTTCCATGAAGGAGGTTCTGCAAGCACTGCTTCGTTGCAGGGACTCGTACGGTTTTGGACGAAGGAGTCCTGGAGTCGTTGATTTTGTTCCCCTCCTGAAGAATTCCAAGAGGGAAAGTAGATTGGATAGTGACGATGATTTATAG 3144 0.4141 MVRHVRGLYTVSTSSISSSSLRNNLVSKTSKNLKGKEKPLFLAKMPYYLFSIFFFFVLSDAETNNKSQLYDQEHTVLLNLKQHLYPFLNQWVPPNSSHCSWPWIDCTDGSVTKLDFVDMNITKTIPPFICDLKNLTFIDFQLNYFSGEFPKFLYNCSKLEYLDLSQNNFVGPIPNDVDRLANLRFLNLAANYFSGDIPASIGRLKELRNLQLYSCGFNGSIPDEIGDLSNLEFLDLRLNTNLPPTQLPASFTKLKKVKTFWMKSMNLIGKIPETIGEMASLEELDLSENGLNGQIPSSLFALKNLSILYLWNNRLSGEIPTEIEALNLTVLDVSKNFLTGKIPDGLGKLKKLTGLSLQMNQLSGEIPESLAHLPALVDFVVFENNLSGTLPRYFGRYSPLETFQVATNRLTGNLPEDLCYNGKLVGVSAYDNDLSGELSESLGSCNNNLKYLFLQNNSFSGKIPAGLWTSYHLVTLMIDSNKFTGELPQRLAWNLSSLIISNNQFSGGIPVGVSTWKNLVKFEARKNLFNGSIPQELTTLPKLTNLFLDQNQLTGPLPSEIISWKSLNALILSHNQLSGPIPDSIDRLPNLSQLDLSNNQLSGHIPPQLGKLSMALTNLNLSSNLFEGKIPSEFGSPAYSDSFLNNSGLCADTKTLNLPLCNPGSDLQIERLRKRSSASLTLVIFLVIVASLAAFSVLLLIVRLYKSRKQELDNSWKLTSFQRVSFSEMNIVSSLTDHNIIGRGGYGMVYQVPVDGLGYVAVKKIFSNKKWEQKLEDAFLAEVKILSNIRHNNIVKLLCCMSNDDSLLLVYEYLENNSLDRWLIKKNRLNHNFVLDWPKRLQIAIGAAQGLTYMHHDCPHPVVHRDIKTSNILLDSEFNAKVADFGLARILIKPSELTMSGVAGSFGYIAPEYIQTTKINEKIDVYSFGVVLLELTTGKEANRGDEHSSLAEWAWRHVQLGGDVEEVLDKEIMEACYMDEICCVFKLGVMCTAIVPTSRPSMKEVLQALLRCRDSYGFGRRSPGVVDFVPLLKNSKRESRLDSDDDL 1047
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco01g1073 1047 SUPERFAMILY RNI-like 110 387 - -
Acco01g1073 1047 Gene3D Transferase(Phosphotransferase) domain 1 814 1018 - -
Acco01g1073 1047 Pfam Leucine rich repeat 564 601 IPR001611 GO:0005515
Acco01g1073 1047 Gene3D Ribonuclease Inhibitor 242 325 IPR032675 -
Acco01g1073 1047 Gene3D Ribonuclease Inhibitor 72 178 IPR032675 -
Acco01g1073 1047 ProSiteProfiles Leucine-rich repeat profile. 590 613 IPR001611 GO:0005515
Acco01g1073 1047 Gene3D Phosphorylase Kinase; domain 1 705 813 - -
Acco01g1073 1047 Gene3D Ribonuclease Inhibitor 429 662 IPR032675 -
Acco01g1073 1047 SMART LRR_typ_2 180 204 IPR003591 -
Acco01g1073 1047 SMART LRR_typ_2 588 612 IPR003591 -
Acco01g1073 1047 SMART LRR_typ_2 349 373 IPR003591 -
Acco01g1073 1047 SMART LRR_typ_2 278 302 IPR003591 -
Acco01g1073 1047 SMART LRR_typ_2 540 564 IPR003591 -
Acco01g1073 1047 FunFam Receptor-like protein kinase HSL1 isoform A 70 219 - -
Acco01g1073 1047 ProSitePatterns Serine/Threonine protein kinases active-site signature. 862 874 IPR008271 GO:0004672|GO:0006468
Acco01g1073 1047 SMART serkin_6 735 1010 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco01g1073 1047 FunFam Putative leucine-rich repeat receptor-like protein kinase family protein 224 324 - -
Acco01g1073 1047 PRINTS Leucine-rich repeat signature 281 294 - -
Acco01g1073 1047 PRINTS Leucine-rich repeat signature 588 601 - -
Acco01g1073 1047 ProSitePatterns Protein kinases ATP-binding region signature. 741 764 IPR017441 GO:0005524
Acco01g1073 1047 Gene3D Ribonuclease Inhibitor 326 428 IPR032675 -
Acco01g1073 1047 Pfam Leucine Rich Repeat 158 178 IPR001611 GO:0005515
Acco01g1073 1047 Pfam Leucine Rich Repeat 327 349 IPR001611 GO:0005515
Acco01g1073 1047 SUPERFAMILY Protein kinase-like (PK-like) 726 1009 IPR011009 -
Acco01g1073 1047 SUPERFAMILY RNI-like 342 671 - -
Acco01g1073 1047 CDD STKc_IRAK 741 1011 - -
Acco01g1073 1047 Pfam Protein kinase domain 737 1007 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco01g1073 1047 Gene3D Ribonuclease Inhibitor 179 241 IPR032675 -
Acco01g1073 1047 ProSiteProfiles Protein kinase domain profile. 735 1010 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco01g1073 1047 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 236 1004 - -
Acco01g1073 1047 FunFam Leucine-rich repeat receptor-like protein kinase TDR 346 663 - -
Acco01g1073 1047 FunFam Kinase family with leucine-rich repeat domain-containing protein 814 1022 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco01g1073 Acco-ChrAcco01 14645895 14649397 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco01g1073 67 1047 Receptor kinase-like Gene Family AT5G25930 51.852 0.0 942
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Acco01g1073 Pkinase 4.6e-48 CL0016