Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco01g1044 ATGGATTCTGCTTCCTCGTATCAGTTTATTCTTGCAATGGGAAGGAAAAAGTCAGAGGAAGCTGGCCCTGCCACAAAGGCTAAGAAGGAGAAGTTCTCTGTCTCTGCCTTGCTTGCCAGTATGGATGAAAAACCTGATAAACCCAAAAAAGTATCTTCTTCATCCAGTAAGCCCAAGGCAAAATCTGCTCCAAAAGTTTCTGCATATACTGACAGTATTGATCTTCCTCCCTCTGATGATGAAGATGAAGATGTCATGAAAGAGGAGCAAGAACAAAATATGACAAAGTTAAAAAAGCGGGAAAAGAAGGATATTCTTGCTGCCCATGCTGCAAAGTTGGCTAAGCTGGAAGCACTCAAGGATGACCGTGATGCTTTTACTGTGGTAATTGGAAGCCGGACTTCAGTGCTTGATGGAGAAAATGATGCCAATGCCAATGTGAAAGATGTGACCATAGAAAACTTTTCTGTGTCAGCTCGGGGTAAAGAACTCCTTAAGAATGCATCAGTAAAGATATCTCATGGGAAAAGGTATGGTTTGGCTGGGCCCAATGGAAAGGGCAAGTCCACACTGTTGAAGCTCCTTGCCTGGAGGAAGATACCTGTGCCAAAGAATATTGATGTGCTTCTGGTTGAACAGGAGGTAGTTGGTGATGAAAAAACAGCACTTGAAGCTGTTGTTTCAGCTAATGAAGAACTTGTTAAAACCCGACAAGAAGTGGCTCTTCTTCAAAATGCAAGTTCCGCTGAAGAAAGTGTGGACAAGGATGATGGACTTGAAGATGATGTAGGAGAGAAGCTTGCTGAGCTGTATGACAAGTTACAGCTGATGGGATCTGATGCAACTGAAGCTCAAGCATCTAAGATTCTAGCAGGATTAGGTTTTACAAAGGATATGCAGGGCCGTGCTACAAAATCATTTAGTGGGGGTTGGAGGATGAGAATTTCTTTAGCCAGAGCACTTTTTGTTCAACCAACTCTATTATTGCTTGATGAACCAACAAATCATCTTGATCTGAGAGCTGTTCTCTGGTTGGAGGAGTACTTGTGCCGTTGGAAGAAGACTTTGGTGGTCGTCTCACATGATAGGGATTTCCTAAATACAGTTTGCAATGAAATTATTCACCTGCATGATTTTAAACTTCATATCTACCGGGGGAATTTTGATGATTTTGAAAGTGGTTATGAGCAGCGTCGCAAGGAGATGAATAAGAAGTTTGAGATTTATGATAAGCAGATGAAAGCAGCCAAACGAAGTGGAAATCGGGTTCAGCAGGAAAAGGTGAAGGATCGAGCTAAGTTTGCTGCTTCTAAAGAAGCAGCAAAAAGCAAGGGCAAGGGCAAGGTTGATGAGGAGGAAGCCCCAGCAGAGGTTCCACAAAAGTGGAGGGATTACAGTGTTGAGTTTCACTTCCCTCAACCCACTGAACTAACACCTCCTCTGCTGCAGCTTATTGAGGTGAGCTTCAGCTATCCAAATCGAGCGGATTTCAGACTCTCAAATGTTGATGTTGGAATTGATATGGGCACTCGTGTAGCCATTGTTGGGCCTAATGGAGCTGGGAAATCAACGCTGCTGAATCTTCTTGCTGGTGACTTGACTCCAACTGAAGATATTCCCAGCACTTTGTGGACCTTCTAA 1641 0.4339 MDSASSYQFILAMGRKKSEEAGPATKAKKEKFSVSALLASMDEKPDKPKKVSSSSSKPKAKSAPKVSAYTDSIDLPPSDDEDEDVMKEEQEQNMTKLKKREKKDILAAHAAKLAKLEALKDDRDAFTVVIGSRTSVLDGENDANANVKDVTIENFSVSARGKELLKNASVKISHGKRYGLAGPNGKGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDEKTALEAVVSANEELVKTRQEVALLQNASSAEESVDKDDGLEDDVGEKLAELYDKLQLMGSDATEAQASKILAGLGFTKDMQGRATKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRWKKTLVVVSHDRDFLNTVCNEIIHLHDFKLHIYRGNFDDFESGYEQRRKEMNKKFEIYDKQMKAAKRSGNRVQQEKVKDRAKFAASKEAAKSKGKGKVDEEEAPAEVPQKWRDYSVEFHFPQPTELTPPLLQLIEVSFSYPNRADFRLSNVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLTPTEDIPSTLWTF 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco01g1044 546 ProSitePatterns ABC transporters family signature. 307 321 IPR017871 GO:0005524|GO:0016887
Acco01g1044 546 MobiDBLite consensus disorder prediction 434 457 - -
Acco01g1044 546 Pfam ABC transporter 499 538 IPR003439 GO:0005524
Acco01g1044 546 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 461 537 IPR027417 -
Acco01g1044 546 Coils Coil 399 419 - -
Acco01g1044 546 Coils Coil 226 246 - -
Acco01g1044 546 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 150 410 IPR003439 GO:0005524
Acco01g1044 546 Pfam ABC transporter 165 335 IPR003439 GO:0005524
Acco01g1044 546 MobiDBLite consensus disorder prediction 36 98 - -
Acco01g1044 546 FunFam ABC transporter F family member 4 148 431 - -
Acco01g1044 546 Gene3D - 147 435 IPR027417 -
Acco01g1044 546 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 150 398 IPR027417 -
Acco01g1044 546 PANTHER ATP-BINDING TRANSPORT PROTEIN-RELATED 101 537 - -
Acco01g1044 546 SMART AAA_5 174 379 IPR003593 GO:0016887
Acco01g1044 546 CDD ABCF_EF-3 150 380 - -
Acco01g1044 546 Gene3D - 446 539 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco01g1044 Acco-ChrAcco01 13914029 13915733 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco01g1044 163 361 Calmodulin-binding Proteins AT2G36910 27.619 5.84e-07 50.8