Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco01g1042 ATGAACCAACAGGGTTTTCATCTTCTGGTTCTGTATCTCATATTCTTCTTCATCAGAATATTTCCCTGCGAAGCACAGATTTCATCAAATAAAAATAGTACTGCCCCTTCGTCTTCACAAGATGTTGTCACAAATTTCCGACCAAGTCTTGCTGTTGTAATGGCGGTTCTGACTTTCTTGTTCTTTCTAACTTTCTGTCTCCTCATCTATGTCAAGTGTTGCAGTAACAGGAGAGATTCATCAGTTTATGGAAACCCAGAAAGTCAACCTTGGTTTATCAGAGCAAGGTCAACGAGATTCTCAGGAATCGACAAGGCTGCCATAGAATCACTCCCCTTCTTCAGATTCTCTTCCTTAAAAGGATCAAAAGAAGGCCTTGAATGTGCTGTTTGCTTGTCGAAGTTCGAAGATGTCGAGATTCTCAGGCTGCTTCCAAAATGTAAACATGCTTTTCACATTAATTGTATTGATCACTGGCTTGAGGAGCATTCTAGTTGTCCTCTCTGTAGGCACAAGGTTGATCCTGAAGATCACACCAGTTTCACATATTCTAATAGCTTGAGGCTGCTCACCAATGGAGGAGCCGGCGCAGAATTCGGAGGAGAAGAATCATCCAACTTAGGGCTTTTTGTACAGAGAGAGGAAGAAGATCAACAAAATAATGGGTCATCATCAAGATTCAATTTTGGGAGCAGTTTGAGGAGAATCATGAACATAAAGGGTTCTTCTTCAAAAGAAGAAGATGAATTACCTATTCAAAAACCAGCTCATCATGATGATCAAAGAAAAAAGGTCTATCACAAGCTCAAACACAGTATTTCTGTATCCGATTTTGTGTTGAAGAATCGATGGAGCAATGTTAGTTCCTCTGACCTCATGTTCTTGAACTCAGAGATGATTGGTTCTGCTTCAAGTTTAAGATTCAACAATACTAATGGTGATCAGAGTCAGGTTACAATTGGAGAAGCAGGAAATGACGATGAGCAAGTTATTGTGATGAATCTGAAGGAGGAGATGGAGAGGAAGGTTTTATTTGAGAACAAAGTGAGTGGAGTACTAAAGAAGAACAATCTCAATTCTGATTCAGATTCTGCAGAAAATAATAATCTGAGTGATAAATCAAAGTATATTGTGAATTCAGATGAGAAAAGATCAGTATCAGATATAACTGCTGTGACTAGATTTGGAGGTTTGGGTATGAGAAATGGTAGCCTTGATAATAATAATAAAGGTTCTTCTTCTTATTCTTCATCTTTGGTTGATGATCAGAAGAATGTGAAAGAGGAAAGAGTGAGACAGATTTGGCTGCCAATTGCCAAAAGAACAGTTCGATGGTTTGTTAACAGAGAAAAAAGGTTTCAGGAATCTCGGAATAATGTATAG 1383 0.3854 MNQQGFHLLVLYLIFFFIRIFPCEAQISSNKNSTAPSSSQDVVTNFRPSLAVVMAVLTFLFFLTFCLLIYVKCCSNRRDSSVYGNPESQPWFIRARSTRFSGIDKAAIESLPFFRFSSLKGSKEGLECAVCLSKFEDVEILRLLPKCKHAFHINCIDHWLEEHSSCPLCRHKVDPEDHTSFTYSNSLRLLTNGGAGAEFGGEESSNLGLFVQREEEDQQNNGSSSRFNFGSSLRRIMNIKGSSSKEEDELPIQKPAHHDDQRKKVYHKLKHSISVSDFVLKNRWSNVSSSDLMFLNSEMIGSASSLRFNNTNGDQSQVTIGEAGNDDEQVIVMNLKEEMERKVLFENKVSGVLKKNNLNSDSDSAENNNLSDKSKYIVNSDEKRSVSDITAVTRFGGLGMRNGSLDNNNKGSSSYSSSLVDDQKNVKEERVRQIWLPIAKRTVRWFVNREKRFQESRNNV 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco01g1042 460 Pfam Ring finger domain 127 170 IPR001841 -
Acco01g1042 460 SUPERFAMILY RING/U-box 107 176 - -
Acco01g1042 460 FunFam RING-H2 finger protein ATL43 103 177 - -
Acco01g1042 460 ProSiteProfiles Zinc finger RING-type profile. 128 170 IPR001841 -
Acco01g1042 460 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 102 179 IPR013083 -
Acco01g1042 460 MobiDBLite consensus disorder prediction 242 261 - -
Acco01g1042 460 MobiDBLite consensus disorder prediction 402 419 - -
Acco01g1042 460 CDD RING-H2_EL5-like 127 170 - -
Acco01g1042 460 SMART ring_2 128 169 IPR001841 -
Acco01g1042 460 MobiDBLite consensus disorder prediction 400 419 - -
Acco01g1042 460 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 23 451 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco01g1042 Acco-ChrAcco01 13907054 13908436 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco01g1042 11 454 C3H Transcription Factor Family AT4G28890 44.273 1.32e-109 329
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco01g1042 01 13907054 13908436 Acco01g1042 01 13907054 13908436 ECH