Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco01g1040 ATGGAACGGATCGTCGGCGGCAAGTACAAGCTCGGCCGCAAGATAGGGAGTGGATCCTTCGGCGAAATTTACCTCGCTACTCATATCGATACTATTGAGATAGTCGCGATTAAAATTGAGAACACTCAAACTAAGCACCCACAACTGCTTTATGAGGCAAAACTGTATCATATTCTTCAAGGAGGAAGTGGAATTCCCAGCATAAGGTGGTCTGGTGTAGACGGGGAGGACAATGTGCTAGTTATTGATTTGCTGGGACCCAGTCTTGAAGATCTGTTTGTGTATTGTGGAAGAAAGTTTTCGTTGAAGACTGTATTAATGTTGGCTGATCAGATGATCACCAGAATAGAATATGTTCATTCTAAGGGATTTCTACATAGAGATATAAAACCTGATAACTTTCTCATGGGACTTGGTCATAAAGCGAATCAGGTTTACATAATTGACTTTGGGCTTGCAAAACGATATCGGGACCCCACAACTAATCGTCATATTCCTTACCGGGAGAACAAAAACTTAACTGGCACTGCACGTTATGCAAGCTGTAATACTCATCTTGGTATTGAGCAAAGCCGCCGGGATGATTTGGAGTCACTAGGATATGTGCTTTTGTACTTCCTTAGAGGAAGCCTTCCTTGGCAAGGTCTAAAGGCTGCAACAAAGAAGCAAAAGTATGATAAAATACGTGAAAAGAAAGTATCAACTCCTATTGAGGTCCTAGGCAAATCTCATCCTGTAGAGTTTGCTTCGTACTTTCATTATTGCCACTCTTTGACATTTGACCAGCGACCTGATTATGGATTTTTGAAGCGTCTATTCCGGGACCTATTTGCTCGACAAGGTTTTGAATTTGATTATGTATTTGATTGGACCATTTTAAAGTACCAGCAGACACAAAAGATTAAAGTTAAGCCTCAAACATCTCCAGCTCCTGGAGCAAGCAACAGTCATCCAATGCCAACAGGTGTTTATGCTTATTCAGGGGATGTCTCAGAGCACATTAGATCTGGAAATGCTATTGGTTCTGGTGTTAAGATGCAGTTTAAATCACCAGCAGGAAAAAATACAGGTGTTAGTAATCCTCTTGACAAGAATGTTTTTGAAGAAGCAAATATGCCTTCTACTTCATATTCACATGCTGGTACCTCAAAAAGGAACTCCTTGAAGCCTGCCTTGACTCCTGAAGCTGCAAACCCTGGTCGTGGCCGAGGCAGTAAAATTGGTCCTTCAAGTAGCTGGATTTCGTCTCTGCAGCAAAATTGGTCCTTCAAGTAG 1275 0.418 MERIVGGKYKLGRKIGSGSFGEIYLATHIDTIEIVAIKIENTQTKHPQLLYEAKLYHILQGGSGIPSIRWSGVDGEDNVLVIDLLGPSLEDLFVYCGRKFSLKTVLMLADQMITRIEYVHSKGFLHRDIKPDNFLMGLGHKANQVYIIDFGLAKRYRDPTTNRHIPYRENKNLTGTARYASCNTHLGIEQSRRDDLESLGYVLLYFLRGSLPWQGLKAATKKQKYDKIREKKVSTPIEVLGKSHPVEFASYFHYCHSLTFDQRPDYGFLKRLFRDLFARQGFEFDYVFDWTILKYQQTQKIKVKPQTSPAPGASNSHPMPTGVYAYSGDVSEHIRSGNAIGSGVKMQFKSPAGKNTGVSNPLDKNVFEEANMPSTSYSHAGTSKRNSLKPALTPEAANPGRGRGSKIGPSSSWISSLQQNWSFK 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco01g1040 424 CDD STKc_CK1_delta_epsilon 8 282 - -
Acco01g1040 424 MobiDBLite consensus disorder prediction 373 424 - -
Acco01g1040 424 MobiDBLite consensus disorder prediction 373 389 - -
Acco01g1040 424 SUPERFAMILY Protein kinase-like (PK-like) 4 290 IPR011009 -
Acco01g1040 424 FunFam Casein kinase I isoform delta-like 1 339 - -
Acco01g1040 424 SMART serkin_6 9 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco01g1040 424 PANTHER CASEIN KINASE-RELATED 7 348 - -
Acco01g1040 424 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Acco01g1040 424 Gene3D Transferase(Phosphotransferase) domain 1 1 319 - -
Acco01g1040 424 ProSiteProfiles Protein kinase domain profile. 9 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco01g1040 424 MobiDBLite consensus disorder prediction 408 424 - -
Acco01g1040 424 Pfam Protein kinase domain 9 227 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco01g1040 424 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco01g1040 Acco-ChrAcco01 13850973 13854824 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco01g1040 9 215 EF-hand Containing Proteins AT4G23650 29.577 1.01e-14 73.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Acco01g1040 Pkinase 2.3e-27 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco01g1040 01 13850973 13854824 Acco01g1040 01 13850973 13854824 ECH