Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco01g1029 ATGTGGTTGTTCTGTAGCTTGGGATTAAGAGCATCGAAAGAAGAATTCATGGTTGCTGAGGGAAGGGAAGCAGAAAAAAGAGGGAGAGTACAAGTACTAGAAGAGAAAGTAGATGGAGATGGAGAAAGACTTGAGGATGGTTTGATTCCTCTCTATGATCATCAGCATATCTTTTCTCCACTGTTGAATCCTGATTCTTGTTCAATCCTAGCTTCTACCTCTCTCTTACTTGATTCCTTTTATTCTTTCCCATTTTCTTGTTTTCTGAGAATAATTAACCTTGGTTTCATGTCTGTGCCAGAGAAAGACTATGTAATCTTATCAGAGACTCCAACTCCATCAATGGAAAGCTCAGACAAGTTTTCCCAGAGAACAAATGGTTTGAATCTTAAGGCTACTGAACTAAGGCTCGGGTTACCCGGGTCGGAGTCACCCGAGAGGGATTCGGGTTTGGAGGAAAAGAGCGAGTTTCCATTAGGCATGCTGAAGAGTCTCGCGTCTGGGGCCAAGAGGGGCTTCTCAGACGCCATTGATGGCGGTTCTGGGAAGTGGGTTCTCTCTGGAAAAGGTGGTTCTGATATGGGTATGGGTAAAGATTGTGGCTTGTTCTCTCCCAGAGGAGCTAACTCCGGCAAGACCCCTGTCCGGTCGGATTCCGGCAATCATCACGCGGGTTTGGGTCCCTCCGTATTGAAAGATAGTATTCCTCAGCCAACAAAGCCTTTGCATGAGAAGAAGCCTCAGTTTCCTGCTCCTGCTTCAAAGGCACAAGTTGTGGGATGGCCACCAATCCGATCTTTTCGGAAGAACTCAATGGCATCTCAGCCTCAAAAGAATGGAGAAGATGCAGAATCAGGAAAGAAAGGTGGGTGTCTTTATGTAAAAGTGAGCATGGATGGTGCTCCATACTTGAGGAAGGTTGATCTCAACAACTTTGCCTCTTACAAGGAACTTTCTTCTGCACTGGAAAAGATGTTCAGTGGCTTTACAATGAGTCAATGCGGCTCTCATGGGGTTTCTGATCGGGACAATATGAGTGAGAGCAGATTGGTGGATCTGCTTAATGGTTCGGAATACGTGCTTACGTACGAGGACAAGGATGGCGATTGGATGCTAGTTGGTGATGTTCCTTGGGAGATGTTCACTGATTCTTGCAAGAGGATGAGGATAATGAAGAGTTGTGAAGCAATTGGGTTAGCACCGAGAGCGATGGAAAAGTGCAAAAGTCAGAACTAG 1236 0.4571 MWLFCSLGLRASKEEFMVAEGREAEKRGRVQVLEEKVDGDGERLEDGLIPLYDHQHIFSPLLNPDSCSILASTSLLLDSFYSFPFSCFLRIINLGFMSVPEKDYVILSETPTPSMESSDKFSQRTNGLNLKATELRLGLPGSESPERDSGLEEKSEFPLGMLKSLASGAKRGFSDAIDGGSGKWVLSGKGGSDMGMGKDCGLFSPRGANSGKTPVRSDSGNHHAGLGPSVLKDSIPQPTKPLHEKKPQFPAPASKAQVVGWPPIRSFRKNSMASQPQKNGEDAESGKKGGCLYVKVSMDGAPYLRKVDLNNFASYKELSSALEKMFSGFTMSQCGSHGVSDRDNMSESRLVDLLNGSEYVLTYEDKDGDWMLVGDVPWEMFTDSCKRMRIMKSCEAIGLAPRAMEKCKSQN 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco01g1029 411 MobiDBLite consensus disorder prediction 203 257 - -
Acco01g1029 411 SUPERFAMILY CAD & PB1 domains 288 392 - -
Acco01g1029 411 Pfam AUX/IAA family 133 402 IPR033389 -
Acco01g1029 411 ProSiteProfiles PB1 domain profile. 291 393 IPR000270 GO:0005515
Acco01g1029 411 Gene3D - 286 404 - -
Acco01g1029 411 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 128 398 IPR003311 GO:0005634|GO:0006355
Acco01g1029 411 MobiDBLite consensus disorder prediction 132 155 - -
Acco01g1029 411 FunFam Auxin-responsive protein 286 403 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco01g1029 Acco-ChrAcco01 13646783 13652236 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco01g1029 294 401 B3 DNA Binding Superfamily AT4G23980 32.407 4.81e-08 53.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Acco01g1029 AUX_IAA 8.3e-87 CL0072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco01g1029 01 13646783 13652236 Acco01g1029 01 13646783 13652236 ECH