Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco01g1000 ATGCGGTCCCTCAATATCCTTCCTCCATTGCCGTCGCTGCAAAACCCCACCTCGGAATACATTCACTTCTTCAAACCCAGTAGCGCCTTCAATTTCCACGCAAGTTCTAAAACCCTAACTAACGGTTTTTGCTGCAGAGTCCAAAGCAGTGGGCTCCGCTACCGAAAGATCAAGTGCAATACTTTTAGGGATTCCGGCGAAGAAACTAAGGTTGTATCGGACTCCACTGGCGGCGATGATGGGGGAGGGAGTGGTGGTAGCGGCGGTGATGGTGGTGAGGATAGGGATGTGCAGAAAAAAGATGGGTCTTCTTCGGGGCCTTTTCCGGATTGGTTGAATTTCACTTCTGATGACGCGAGGACCGTCTTTGTGGCACTGGCTATCTCGCTCGCGTTTCGGTCATTTGTGGCCGAGCCTAGGTACATTCCTTCCTTGTCAATGTATCCTACGTTTGATGTTGGAGACCGAATTGTTGCGGAGAAGGTTTCATACTATTTTAGAAAGCCTTGCGCAAATGACATAGTAATATTTAAAAGCCCACCAATCCTTCAGGAAGTTGGGTACACCGATGATGATGTCTTTATAAAACGAGTGGTTGCAAAGGAAGGTGATATTGTGGAGGTTCACAAAGGGCATCTTATAGTTAATGGGGTTGAAAGGAATGAAAAGTTCATCCTTGAACCACCTGCTTATGACATGACGCCAACACGTGTGCCAGAGAACTACGTTTTTGTGATGGGAGACAATCGTAACAACAGCTATGATTCGCATGTGTGGGGCCCCCTGCCAGCCAAGAACATAATAGGCAGATCAGTTTTCCGGTATTGGCCACCAAATAGGATTGGCAGCACAGCTTCTGAGAAGAGCTGTCCTGTTGAAAGTGACCCAGGCACTAGTTTAGCTTCGCAATAA 912 0.4759 MRSLNILPPLPSLQNPTSEYIHFFKPSSAFNFHASSKTLTNGFCCRVQSSGLRYRKIKCNTFRDSGEETKVVSDSTGGDDGGGSGGSGGDGGEDRDVQKKDGSSSGPFPDWLNFTSDDARTVFVALAISLAFRSFVAEPRYIPSLSMYPTFDVGDRIVAEKVSYYFRKPCANDIVIFKSPPILQEVGYTDDDVFIKRVVAKEGDIVEVHKGHLIVNGVERNEKFILEPPAYDMTPTRVPENYVFVMGDNRNNSYDSHVWGPLPAKNIIGRSVFRYWPPNRIGSTASEKSCPVESDPGTSLASQ 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco01g1000 303 PRINTS Bacterial leader peptidase 1 (S26A) family signature 135 151 IPR000223 GO:0006508|GO:0008236|GO:0016020
Acco01g1000 303 PRINTS Bacterial leader peptidase 1 (S26A) family signature 194 206 IPR000223 GO:0006508|GO:0008236|GO:0016020
Acco01g1000 303 PRINTS Bacterial leader peptidase 1 (S26A) family signature 238 257 IPR000223 GO:0006508|GO:0008236|GO:0016020
Acco01g1000 303 SUPERFAMILY LexA/Signal peptidase 133 284 IPR036286 -
Acco01g1000 303 CDD S26_SPase_I 138 270 IPR019533 GO:0004252|GO:0006465
Acco01g1000 303 ProSitePatterns Signal peptidases I serine active site. 144 151 IPR019756 GO:0004252|GO:0016020
Acco01g1000 303 ProSitePatterns Signal peptidases I signature 3. 243 256 IPR019758 GO:0004252|GO:0016020
Acco01g1000 303 FunFam Peptidase/ serine-type peptidase 144 275 - -
Acco01g1000 303 MobiDBLite consensus disorder prediction 284 303 - -
Acco01g1000 303 NCBIfam signal peptidase I 121 278 IPR000223 GO:0006508|GO:0008236|GO:0016020
Acco01g1000 303 PANTHER SIGNAL PEPTIDASE I 107 282 IPR000223 GO:0006508|GO:0008236|GO:0016020
Acco01g1000 303 MobiDBLite consensus disorder prediction 68 104 - -
Acco01g1000 303 Gene3D Umud Fragment, subunit A 132 289 - -
Acco01g1000 303 Pfam Signal peptidase, peptidase S26 119 276 IPR019533 GO:0004252|GO:0006465
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco01g1000 Acco-ChrAcco01 12954654 12957426 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco01g1000 147 277 MADS-box Gene Family AT1G29960 32.331 5.96e-12 60.1