Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco01g0998 ATGACGACTGCCGTTGCTTGGAGGTTTGGATCCAATAATGGTAGCAGCCTTGCTGCTAATGATATGGAAAGAAATGGTGAGGGGAACATTTCAGAGTCAGAGCCCCCAACTCCACGTTCTGTTTTGAAGATGGGATTGAGAAAATCTCATACTTCTGCTATCCAGCTTAAGTTTCTTACATCCGTCAGTGGTTGCAGAGACCGCAGCAGCAGCATGGAGGATCCAGATGGGATATTAGCAAGTGTTGCCCAATGCATTGAGCGGCTGCGACAGAGCTCATCCTCTGCACAAGAGAAGGAGTACTCCTTGAGGCAGTTGTTGGAGCTCATTGATATGTGTGAGAATGCGTTTAGTGCTGTTGGATCTCATTCTCAGGCAGTACCAGTGCTTGTTTCTCTTCTCCGGTCTAGTTCATTGAGTGTGAAGATTCAAGCAGCGACTGTTCTGGGCTCCCTCTGTAAAGAAAATAAGCTAAGAGTAAAAGTGTTGCTTGGAGGATGCATTCCCCCATTGCTTGGGCTGCTTAAATCCAATTCAGCTGAAGGGCAAGTTGCTGCTGCAAAGACTATTTATGCTGTCTCTCAAGGTGGCTCAAAAGACCACGTTGGATCAAAAATTTTTTCAACTGAAGGAGTAGTACCTGTGCTGTGGGAGCAGCTTCAGAAGGGGCCGAAGACTGGAAATGTAGTTGATGGTTTATTGACGGGAGCCTTGAAAAATCTGTCCAGTAATACTGAGGGATTCTGGAATGCAACAATACATGCTGGAGGAGTCGACATATTAATGAAGTTATCGACAAAGGGGCTTCCCGGCACTTTAGCTAATATGTGCTTCTTACTTGCCAGCTTGATGGTGGAGGATGCATCCGTTTGTTCAAAAGTATTGACTTCAGAGGCAACAAAACAACTCCTGAAATTATTAGGCCCTGGTAATGATGCCCCTATTAGAGCTGAAGCAGCTGGTGCTCTGAAATCTTTGTCTTCTCAGTGCAAAGAAGCAAGGCGCGAGATAGCTAATTCTAATGGCATTCCTGCTTTGATCAGTGCTACCATAGCTCCTTCGAAAGAGTTCATACAGGGCGAGCATGCTCAAGCATTGCAGGAAAATGCTATGTGTGCTCTAGCCAACATCTCTGGTGGTTTGTCTTATGTCATCTCCAGCCTTGGTCAAAGCCTTGAATCATGCACCTCAGATACTCAAATTGCTGATACACTGGGGGCTTTAGCTTCAGCTCTTATGATATATGATAACAAGGCTGAAGCTATGAGAACGTCAGATCCATTGGTGGTTGAGCAAACATTGCTCAAGCAATTCAAATCTCAATCGCCTTTTCTTGTGAAGGAACGAACCATTGAAGCCCTGGCTAGTTTGTATGGAAATCCTGTACTTTCAATTAAACTTGCAAATTCAAATGCAAAGCATTTGCTTGTTGGATTAATCACAATGGCCGTTAATGAAGTGCAAGATGACCTTATAAGAGCTCTCCTGACATTGTGCAACAATGAAGGCAGTCTTTGGCGTGCTCTTCAGGGCCGTGAAGGAGTTCAGCTGCTGATATCTCTTCTGGGGCTTTCATCAGAACAACAGCAAGAATGTGTGGTTGCTCTCTTATGCCTTCTATCGAATGTGAATGATGAAAGTAACTGGGCCATTACCGCTGTTGGTGGGATACCCCCATTAGTTCAAATTTTGGAGACAGGATCCACAAAAGCAAAAGAAGACTCAGCAAAGATCCTTACAAACCTGTGCAATCACAGTGAAGATATACTTGCCCCTCTTAGTGACATTCAGCAAGAAGGCAGTGCTGCAAGTGATGCAATCGATACAATGATAAAATTAATGAACTCTACCAAAGAAGAAACTCAGGCTAAGGCAGCATCTGCTCTAGCAAGCATCTTTGAGATGAGGAAAGATTCCTCACGCTGCCTTGCAGCAATTTTTCTTTCCATCAAAGAGAACAGGGATGTAGCTGCTGTTGGTAGAGATGCATTACTTCCCTTAGTTACACTAGCAAATTCTTCTGATTTGGATGTTGCAGAGTTGGCAACATGTGCGGTGGCTAATCTTATTTTAGATAGTGAGATTTCAGAGAAAGCTGTTGCTGAAGAAGTTATCTTGCCGGCTACCAGAGTATTACGTGAAGGCACAATTTCTGGAAAAACCCATGCAGCAGCAGCAATTGCTCGGCTCATACGTTCTCAGCAAGTTGATTATTCTATAACTGAATGTGTGAATCGTGCTGGGACTGTACTTGCTTTGGTTTCCTTCCTGGATTCTGCTATTAATGGATCAGTTTCCACGTGTGAGGCTATAGATGGACTGGTGTTCTGTCCAGGTTGGAAAAGAACAGATAAAGCAATCGAGATATTATCACAGTTATGCAGGGATCAGCCTGTTGTTCTTGGAAGCAATGTTGTTGTGGCCTCTGGATGCTTGAGTTCATTGGCTAAAAGGGTAATTGGTACCAAAAATGTGAAGGTCAAAATTGGGGGAGCTGCACTTCTTATTTGTGCTGCCAAAGTGAACCACCTGAGGCTGGTGGAGGAACTCAACCAATCAAACTTGTGTGTTGATCTTGTTCAATCTCTTGTTAATATGCTTTCTTCTGCTCTGCCTTTGTCAAACAAGGGTGAAGAAAACAAGGAATCCATTAGCGTTTTGATACACAGAAAAGAAGATGCCAATGGTAGCGAATCCAACACAGGTACCACCATTTTATCCAACGCCAACTTAGCTATATGGTTATTGTCTATTCTTGCTTGTCATGATGAGAAGTGTAAAATTGCAATAATGGAGGCCGGAGCAATTGACATTCTCATTGAAAAAATCTCAGAGTGTTACTCGCAATATACCCAGGTTGATTATAAAGAAGATAGTAGCATGTGGATTTGTGCATTGTTGTTGGCTGTATTGTTTCAAGATAGAGATATCACCAGAGCACATGCTACCATGAAATCTGTACCAGCTGTTGCCGGTTTATTGAAGTCAGAGGAATTAGCTAACAGATATTTTGCAGCACAAACAGTAGCTAGCCTAGTCTGTAATGGAAGCAGGGGGACACTACTCTCTGTTGCAAATTCAGGGGCTGCAAGTGGGCTAATCTCATTACTTGGCTGCGCCGATATTGACATACAGGACCTTCTGGACTTGTCAGAGGAGTTCTCCTTGGTACGTTATCCTGATCAAGTTGCTCTTGAGAGGTTGTTCAGAGTTGATGGCATTAGGGTTGGTGCCACTTCACGGAAGGTAATACCTGCCCTTGTTGATCTGCTCAAACCAATTCCAGATCGCCCAGGAGCACCTTTCTTAGCTCTTGGACTTCTCACTCAACTCAGGAGAGATTGCCCATCTAATAAGATTGTAATGGTAGAATCTGGGGCCTTGGGGGCACTTACAAAGTATCTTTCACTGGGTCCCCAAGATGCCACTGAAGAAGCTGCTACTGATCTATTGGGAATTCTGTTTGACAATGCTGAGATACGGAGACATGAGGCAGCATTTGGTGCTGTTACTCAACTTGTGGCTGTGTTACGTTTAGGAGGAAGAGGTGCAAGGTACAGTGCTGCCAGGGCATTGGAAAATTTGTTGTCTGCCAATCAGATTAGGAATGCAGAGACTGCTCGACAAGCTGTTCAACCCTTGGTGGAGATTCTTAACACTGGTTTAGAGAAGGAGCAGCATGCTGCAATCGCTACATTGGTTAGGCTTCTAAGTGAAAATCCATCAAGAGCACTAGCTTTTGCTGATGTTGAAATGAATGCAGTGGATGTGCTTTGCAGGATTCTTTCATCAAATTGTTCATTGGACCTCAAAGGGGATGCTGCTGAATTATGTTGTGTTCTGTTTGGAAATACACGGATTAGGTCCTCCATAGCTGCTGCACGCTGTGTTGAACCTCTAGTTTCTCTCCTTGTAAGTGAGTTCAGTCCTGCCCAGCATTCCGTTGTCTGTGCACTGGATAGGCTTGTTGACGATGAGCAATTGGCTGAACTAGTTGCTGCTCATGGTGCAATTATTCCTCTTGTTGGTCTTCTCTATGGCAGGAATTATATGCTCCATGAGGCCATTTCTAGAGTTCTGGTTAAGCTAGGGAAAGATAGACCTGCTTGTAAAATGGAAATGGTCAAAGCTGGAGTTATTGAAAGTGTACTTGACATTCTTCATGAAGCACCTGATTATCTGTGTGCAGCATTTGCAGAATTGCTGCGTATATTGACCAATAATGCTAGCATAGCTAAGGGCAAACACCTTCAAAAGGATCCAGCTACACAGCACGTAATTGATCCTCTTATTCGAGTACTTGGTTCTAGCATCCACATATTGCAACAGAGAGCTGTAAAGGCCCTTGTTAGTATTGCACTGATATGGCCAAATGAAATTGCAAAAGAGGGCGGTGTTTTGGAGCTTTCAAAAGTGATACTGCATGCTGATCCTTCACTTCCTCATTCTTTATGGGAATCTGCTGCTTCTGTTTTGTCAAGTATTCTGCAATTCAGTTCTGAATTCTACTTGGAAGTACCTATTGCCGTGTTGGTAAGATTGCTTCGTGCTGGCTCTGAGAGCTTGGTAATTGGTGCATTAAATGCTCTTCTAGTGCTGGAAAGTGATGATGGGACTAGTGCAGAAGCAATGGCTGAAAGTGGTGCCATAGAGGCTCTCTTAGAGCTTCTAAGATCTCATCAGTGTGAAGAAACTGCTGCTAGATTGCTGGAAGTATTGTTAAACAATGTCAAGATTAGAGAAACAAAAGCTACCAAATCTGCCATTGTACCGTTATCTCAGTACCTCTTGGATCCACAAACCCAAGCCCAGCAGGCAAGGTTACTAGCAACTTTGGCTCTTGGCGATCTATTTCAGAATGAGAGTCTTGCTCGAACAAGTGATGCAGTTTCAGCATGTCGTGCTTTGGTGAATGTGCTTGAAGATCAACCAACAGAAGAAATGAAAGTTGTAGCTATATGTGCTTTGCAGAACCTTGTGATGCATAGTCGATCAAATAAAAGAGCGGTTGCTGAGGCTGGTGGTGTACAGGTTGTATTGGATCTGATAGGTTCTAGTGATCCAGAAACATCAGTTCAGGCTGCAATGTTCATTAAACTTCTCTTCTCTAATCATACAACTCAAGAATATGCTTCAAGTGAAACTGTCAGAGCAATGACTGGACCTCAAATTGCTTTGCCTTGCATACAGGCATTCTCTGATACCTCTGTGTTTGTATCTGCTATTGAAAAGGATTTATGGGCTACTGGAAATACGGGCTCTGAGGCCACTCAAGAAGCTGCATTGGATGCACTTTTTCTTCTCAGGCAAGCTTGGTCAGCATGTCCAGCAGAACTCTCAAGAGCTCAGTCGATAGCAGCTGCAGACGGGATTCCTTTGCTCCAGTACTTAATCCAGTCTGGTCCTCCTCGGTTTCAAGAGAAGGCTGAGTTTTTATTGCAGTGTTTGCCTGGCACATTAGTTGTGATCATAAAACGTGGTAACAACATGAAGCAGTCAGTTGGAAATCCAAGTGTTTACTGATCTGATGGCGATGGCGTCTCTAGACTAGATGTAGATCCGAGTAATGCATCAGGATTTGTTGAGCTGGTTAGTCATTAG 5601 0.4372 MTTAVAWRFGSNNGSSLAANDMERNGEGNISESEPPTPRSVLKMGLRKSHTSAIQLKFLTSVSGCRDRSSSMEDPDGILASVAQCIERLRQSSSSAQEKEYSLRQLLELIDMCENAFSAVGSHSQAVPVLVSLLRSSSLSVKIQAATVLGSLCKENKLRVKVLLGGCIPPLLGLLKSNSAEGQVAAAKTIYAVSQGGSKDHVGSKIFSTEGVVPVLWEQLQKGPKTGNVVDGLLTGALKNLSSNTEGFWNATIHAGGVDILMKLSTKGLPGTLANMCFLLASLMVEDASVCSKVLTSEATKQLLKLLGPGNDAPIRAEAAGALKSLSSQCKEARREIANSNGIPALISATIAPSKEFIQGEHAQALQENAMCALANISGGLSYVISSLGQSLESCTSDTQIADTLGALASALMIYDNKAEAMRTSDPLVVEQTLLKQFKSQSPFLVKERTIEALASLYGNPVLSIKLANSNAKHLLVGLITMAVNEVQDDLIRALLTLCNNEGSLWRALQGREGVQLLISLLGLSSEQQQECVVALLCLLSNVNDESNWAITAVGGIPPLVQILETGSTKAKEDSAKILTNLCNHSEDILAPLSDIQQEGSAASDAIDTMIKLMNSTKEETQAKAASALASIFEMRKDSSRCLAAIFLSIKENRDVAAVGRDALLPLVTLANSSDLDVAELATCAVANLILDSEISEKAVAEEVILPATRVLREGTISGKTHAAAAIARLIRSQQVDYSITECVNRAGTVLALVSFLDSAINGSVSTCEAIDGLVFCPGWKRTDKAIEILSQLCRDQPVVLGSNVVVASGCLSSLAKRVIGTKNVKVKIGGAALLICAAKVNHLRLVEELNQSNLCVDLVQSLVNMLSSALPLSNKGEENKESISVLIHRKEDANGSESNTGTTILSNANLAIWLLSILACHDEKCKIAIMEAGAIDILIEKISECYSQYTQVDYKEDSSMWICALLLAVLFQDRDITRAHATMKSVPAVAGLLKSEELANRYFAAQTVASLVCNGSRGTLLSVANSGAASGLISLLGCADIDIQDLLDLSEEFSLVRYPDQVALERLFRVDGIRVGATSRKVIPALVDLLKPIPDRPGAPFLALGLLTQLRRDCPSNKIVMVESGALGALTKYLSLGPQDATEEAATDLLGILFDNAEIRRHEAAFGAVTQLVAVLRLGGRGARYSAARALENLLSANQIRNAETARQAVQPLVEILNTGLEKEQHAAIATLVRLLSENPSRALAFADVEMNAVDVLCRILSSNCSLDLKGDAAELCCVLFGNTRIRSSIAAARCVEPLVSLLVSEFSPAQHSVVCALDRLVDDEQLAELVAAHGAIIPLVGLLYGRNYMLHEAISRVLVKLGKDRPACKMEMVKAGVIESVLDILHEAPDYLCAAFAELLRILTNNASIAKGKHLQKDPATQHVIDPLIRVLGSSIHILQQRAVKALVSIALIWPNEIAKEGGVLELSKVILHADPSLPHSLWESAASVLSSILQFSSEFYLEVPIAVLVRLLRAGSESLVIGALNALLVLESDDGTSAEAMAESGAIEALLELLRSHQCEETAARLLEVLLNNVKIRETKATKSAIVPLSQYLLDPQTQAQQARLLATLALGDLFQNESLARTSDAVSACRALVNVLEDQPTEEMKVVAICALQNLVMHSRSNKRAVAEAGGVQVVLDLIGSSDPETSVQAAMFIKLLFSNHTTQEYASSETVRAMTGPQIALPCIQAFSDTSVFVSAIEKDLWATGNTGSEATQEAALDALFLLRQAWSACPAELSRAQSIAAADGIPLLQYLIQSGPPRFQEKAEFLLQCLPGTLVVIIKRGNNMKQSVGNPSVYXSDGDGVSRLDVDPSNASGFVELVSH 1866
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco01g0998 1866 SUPERFAMILY ARM repeat 607 1045 IPR016024 -
Acco01g0998 1866 SUPERFAMILY ARM repeat 1421 1816 IPR016024 -
Acco01g0998 1866 PANTHER PROTEIN CELLULOSE SYNTHASE INTERACTIVE 1 59 592 IPR044297 GO:0008017|GO:0010330|GO:0051211|GO:2001006
Acco01g0998 1866 SMART arm_5 1284 1324 IPR000225 GO:0005515
Acco01g0998 1866 SMART arm_5 155 195 IPR000225 GO:0005515
Acco01g0998 1866 SMART arm_5 544 584 IPR000225 GO:0005515
Acco01g0998 1866 SMART arm_5 1199 1238 IPR000225 GO:0005515
Acco01g0998 1866 SMART arm_5 594 634 IPR000225 GO:0005515
Acco01g0998 1866 SMART arm_5 330 379 IPR000225 GO:0005515
Acco01g0998 1866 SMART arm_5 653 691 IPR000225 GO:0005515
Acco01g0998 1866 SMART arm_5 287 328 IPR000225 GO:0005515
Acco01g0998 1866 SMART arm_5 1115 1156 IPR000225 GO:0005515
Acco01g0998 1866 SMART arm_5 1536 1575 IPR000225 GO:0005515
Acco01g0998 1866 SMART arm_5 113 154 IPR000225 GO:0005515
Acco01g0998 1866 SMART arm_5 1663 1703 IPR000225 GO:0005515
Acco01g0998 1866 SMART arm_5 1367 1407 IPR000225 GO:0005515
Acco01g0998 1866 SMART arm_5 1157 1197 IPR000225 GO:0005515
Acco01g0998 1866 SMART arm_5 1325 1365 IPR000225 GO:0005515
Acco01g0998 1866 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 1631 1674 IPR000225 GO:0005515
Acco01g0998 1866 Gene3D - 1074 1205 IPR011989 -
Acco01g0998 1866 Gene3D - 858 1048 IPR011989 -
Acco01g0998 1866 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 555 588 IPR000225 GO:0005515
Acco01g0998 1866 MobiDBLite consensus disorder prediction 16 40 - -
Acco01g0998 1866 Gene3D - 595 768 IPR011989 -
Acco01g0998 1866 Pfam Armadillo/beta-catenin-like repeat 123 153 IPR000225 GO:0005515
Acco01g0998 1866 Gene3D - 425 594 IPR011989 -
Acco01g0998 1866 Gene3D - 65 424 IPR011989 -
Acco01g0998 1866 Gene3D - 1458 1819 IPR011989 -
Acco01g0998 1866 Gene3D - 1206 1457 IPR011989 -
Acco01g0998 1866 SUPERFAMILY ARM repeat 1080 1408 IPR016024 -
Acco01g0998 1866 SUPERFAMILY ARM repeat 432 639 IPR016024 -
Acco01g0998 1866 SUPERFAMILY ARM repeat 82 409 IPR016024 -
Acco01g0998 1866 Coils Coil 316 343 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco01g0998 Acco-ChrAcco01 12891751 12900268 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco01g0998 465 583 U-box Gene Family AT3G46510 35.246 7.14e-09 58.9