Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco01g0988 ATGGAGCAGAACGATGTGATTCCACCGTTCGTTGTAAAGACTTTTCATATGGTGAGCGATCCCAACACCGATTCTCTCATAACCTGGGGTCGAGCCAACAATAGCTTCATCGTCATCGATCCTCTGGATTTCTCTCGGATCATCCTTCCGGTATATTTCAAGCACAACAACTTCTCCAGCTTCGTTCGTCAGTTAAACACCTACGGGTTTAGAAAGGTGGATCCAGATCGATGGGAATTCGCGAACGAGTGGTTCCTTAGGGGGCAGAAGCAGTTGTTGAAGAATATTGTGAGGAGGAAACAGAGTAGGATCGGCACGTTTTTGTTTCAGGGGAAGAATAATGAGGAGGTGGAAGATGAAGCGTTGATGATGGAGATAGCGAGGTTGAAGGAAGACCAGAAATCGTTGGATGAAGAGCTTCAAGGAATGAATAAGAGACTGGAGACAACAGAGAAACGACCTCAGCAAATGATGGCGTTTCTGTGCAAACTTGTGGAGAACCCAGATGTGCTTTCTCGAATTTTGTTTGAGAAAGAGCAGAAGCAATTGGGAGAGAAGAAGCGGCGATTGATATCGTCATCGTCGCCGTCGCCGTCGTCTTCGTCTGGTATGGCGGCGGTGAAGATGGAGTTTGACGAAGAGGAAGCTGCTTTGGGCGGTGAGATAATATATTCGCCATCGCCGGAAACAACTACTGGTTTTGAGCTCGGTCGTTATAGCCAGGCATCGCCGACGGAGGAAACAATAGTCTCCGGCGCCGATAGGAGTCCGGATTGGTGGAGCGAGAGAAATGATAGTATAATGGTGAGGCCTCGAATAAATCAACAAGCTTATAATTATTGCAACGCGGAGTCAGTGAGCCCGTTGACGGGGGCTGTGGCGGCGAGAATGGATGACAAAGCGGCGCTGTCGGCGCGTGAGGGAGAAAGCAATTCGGCGAGCCATGGACCAAGGAGCTATTTTACAGAAGTGGCGGCGGAGAGCAGTCCCTGGCCACCTTATCCATTTTCGCTGTTAGAAGGTGGCTTCTAG 1032 0.4952 MEQNDVIPPFVVKTFHMVSDPNTDSLITWGRANNSFIVIDPLDFSRIILPVYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEWFLRGQKQLLKNIVRRKQSRIGTFLFQGKNNEEVEDEALMMEIARLKEDQKSLDEELQGMNKRLETTEKRPQQMMAFLCKLVENPDVLSRILFEKEQKQLGEKKRRLISSSSPSPSSSSGMAAVKMEFDEEEAALGGEIIYSPSPETTTGFELGRYSQASPTEETIVSGADRSPDWWSERNDSIMVRPRINQQAYNYCNAESVSPLTGAVAARMDDKAALSAREGESNSASHGPRSYFTEVAAESSPWPPYPFSLLEGGF 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco01g0988 343 PRINTS Heat shock factor (HSF) domain signature 10 33 IPR000232 GO:0003700|GO:0006355|GO:0043565
Acco01g0988 343 PRINTS Heat shock factor (HSF) domain signature 48 60 IPR000232 GO:0003700|GO:0006355|GO:0043565
Acco01g0988 343 PRINTS Heat shock factor (HSF) domain signature 61 73 IPR000232 GO:0003700|GO:0006355|GO:0043565
Acco01g0988 343 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 7 212 IPR027725 -
Acco01g0988 343 Pfam HSF-type DNA-binding 10 99 IPR000232 GO:0003700|GO:0006355|GO:0043565
Acco01g0988 343 ProSitePatterns HSF-type DNA-binding domain signature. 49 73 IPR000232 GO:0003700|GO:0006355|GO:0043565
Acco01g0988 343 FunFam Heat stress transcription factor B-4 2 100 - -
Acco01g0988 343 SMART hsfneu3 6 99 IPR000232 GO:0003700|GO:0006355|GO:0043565
Acco01g0988 343 MobiDBLite consensus disorder prediction 185 204 - -
Acco01g0988 343 SUPERFAMILY "Winged helix" DNA-binding domain 7 99 IPR036390 -
Acco01g0988 343 Coils Coil 112 153 - -
Acco01g0988 343 Gene3D - 2 100 IPR036388 -
Acco01g0988 343 MobiDBLite consensus disorder prediction 189 204 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco01g0988 Acco-ChrAcco01 12635760 12636915 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco01g0988 6 195 HSF AT3G24520 63.402 1.87e-83 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Acco01g0988 HSF_DNA-bind 6.1e-30 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco01g0988 01 12635760 12636915 Acco01g0988 01 12635760 12636915 ECH