Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco01g0876 ATGGCTAGAAAGTGCTCGAATTGTGGGAAAATAGGGCATAATTCCAGGACTTGCACATCTTTCAGAGGGACTTGTGTAGGACTTCGTCTCTTTGGTGTTCAGCTAGAAGCTTGTTCTGTTTCTTCTGGCATTTTCATCATGAAGAAAAGCTTGAGCGTGGATTCTTTACCAGCCTCTTCATTGTCATCTTCTATTTCATCATTAAACTCTGCAGAGAGATCCTCTGTTGAGTATCTATCAGATGGTCTAATAGATGTTGATGCACCACAAGGCAGAAGAAAAGGAGTAGCTTGGGCAGAAGAAGAACACAGAAGATTCCTTGTTGGGCTTGAGAAGTTAGGAAAAGGAGATTGGAGAGGAATCTCCAGAAATTATGTCACGACAAGAACACCTACTCAAGTAGCTAGTCATGCTCAGAAATATTTTCTTCGAGTTGCAGCTGTCAATAAGAAGAAGAGACGATCAAGTCTCTCTGAGTTGGTGGGTCTGCAGGAGGATGTTAAATCTGGAAGCTGTAAGTGTGAGGATAAGCAGAATGATACTAGCTTGACATTGACGGGCCTAAGCTTGTTTGGAAAGGGAATTAAATCCGAAGCAATAGTGCCGACGTGGCAGCATAGTAATTCCCAGTTGATGAAATCTTCTTCACCCACGTCGCCTGATCTGGAGCTCACACTTGCAGGACCCAAGTCTTTGGAACAAAATGGATCATCATCATTTTCTTCTATCACATAA 735 0.4259 MARKCSNCGKIGHNSRTCTSFRGTCVGLRLFGVQLEACSVSSGIFIMKKSLSVDSLPASSLSSSISSLNSAERSSVEYLSDGLIDVDAPQGRRKGVAWAEEEHRRFLVGLEKLGKGDWRGISRNYVTTRTPTQVASHAQKYFLRVAAVNKKKRRSSLSELVGLQEDVKSGSCKCEDKQNDTSLTLTGLSLFGKGIKSEAIVPTWQHSNSQLMKSSSPTSPDLELTLAGPKSLEQNGSSSFSSIT 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco01g0876 244 Gene3D - 96 148 - -
Acco01g0876 244 CDD SANT 97 142 IPR001005 -
Acco01g0876 244 MobiDBLite consensus disorder prediction 230 244 - -
Acco01g0876 244 SMART c2hcfinal6 4 20 IPR001878 GO:0003676|GO:0008270
Acco01g0876 244 Pfam Myb-like DNA-binding domain 97 142 IPR001005 -
Acco01g0876 244 MobiDBLite consensus disorder prediction 207 222 - -
Acco01g0876 244 MobiDBLite consensus disorder prediction 207 244 - -
Acco01g0876 244 PANTHER TRANSCRIPTION FACTOR KUA1 3 203 - -
Acco01g0876 244 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 92 146 IPR017930 -
Acco01g0876 244 NCBIfam myb-like DNA-binding domain, SHAQKYF class 94 144 IPR006447 GO:0003677
Acco01g0876 244 ProSiteProfiles Myb-like domain profile. 90 142 IPR001005 -
Acco01g0876 244 ProSiteProfiles Zinc finger CCHC-type profile. 3 20 IPR001878 GO:0003676|GO:0008270
Acco01g0876 244 SUPERFAMILY Homeodomain-like 91 145 IPR009057 -
Acco01g0876 244 FunFam transcription factor MYB1R1 96 147 - -
Acco01g0876 244 SMART sant 94 144 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco01g0876 Acco-ChrAcco01 10510924 10511897 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Acco01g0876 Myb_DNA-binding 2.3e-10 CL0123