Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco01g0875 ATGGATTCTTTACCAGCTTCTTCATTGTCATCTTCTACTTCATCATTAAACTCTGCAGAGAGATCCTCTGTTGAGTATCTATCAGATGGTCTAATAGATGTTGATGCACCACAAGGCAGAAGAAAAGGAGTAGCTTGGGCAGAAGAAGAACACAGAAGATTCCTTGTTGGGCTTGAGAAGTTAGGAAAAGGAGATTGGAGAGGAATCTCCAGAAATTATGTCACGACAAGAACACCTACTCAAGTAGCTAGTCATGCTCAGAAATATTTTCTTCGAGTCGCAGCCGTCAATAAGAAGAGACGGTCAACTCTCTCTGAGTTGGTGGGTCTGCAGGAGGATGTTAAATCTGGAAGCTGTAAGTGTGAGGATAAGCAGAATGATACTAGCTTGACATTGACGGGCCTAAGCTTGTTTGGAAAGGGAATTAAATCTGAAGCAATGGTGCCGACGTGGCAGCATAGTAATTCCCAGTTGATGAAATCTTCTTCACCCACGTCGCCTGATCTGGAGCTCACACTTGCAGGACCCAAGTCCTTGGAACAAAATGGATCATCATCATCTTCTTTTCTTCTAAGCTCTTTATGTATCACATAA 594 0.4276 MDSLPASSLSSSTSSLNSAERSSVEYLSDGLIDVDAPQGRRKGVAWAEEEHRRFLVGLEKLGKGDWRGISRNYVTTRTPTQVASHAQKYFLRVAAVNKKRRSTLSELVGLQEDVKSGSCKCEDKQNDTSLTLTGLSLFGKGIKSEAMVPTWQHSNSQLMKSSSPTSPDLELTLAGPKSLEQNGSSSSSFLLSSLCIT 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco01g0875 197 NCBIfam myb-like DNA-binding domain, SHAQKYF class 42 92 IPR006447 GO:0003677
Acco01g0875 197 SMART sant 42 92 IPR001005 -
Acco01g0875 197 PANTHER TRANSCRIPTION FACTOR KUA1 23 150 - -
Acco01g0875 197 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 40 94 IPR017930 -
Acco01g0875 197 SUPERFAMILY Homeodomain-like 39 93 IPR009057 -
Acco01g0875 197 FunFam transcription factor MYB1R1 44 95 - -
Acco01g0875 197 CDD SANT 45 90 IPR001005 -
Acco01g0875 197 Gene3D - 44 96 - -
Acco01g0875 197 ProSiteProfiles Myb-like domain profile. 38 90 IPR001005 -
Acco01g0875 197 Pfam Myb-like DNA-binding domain 45 90 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco01g0875 Acco-ChrAcco01 10480963 10481795 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Acco01g0875 Myb_DNA-binding 1.6e-10 CL0123