Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco01g0864 ATGGGAATTTCTTCGAGTAGCGGAAGAAGAAGCAATTATTTTCACAACCCACATCTTCCAGCACCTTTCTATTACTCGGCAGAATCTCCTCCTCCACCGCCGTCGCTCCCGCCGCCTCAAGGCTACTATTTCACGTCACCCACGCCTTATGCACTGCAAAGCAACAACTATGTGCCTCCCCCTCCTCAAACCCATGTCTTCTGTTACTCAAATGCGTATAGCAATTGTTCCAATTATTCTGATTCTATGGTGGTTAGGTTTCAGTATCCCCCATCTTATTTTCTAAATCATGCTAATGGGTGGGCTCCAATTTATCCTTCGGTGGTTGGTCCTGTCGTCTCGCCACCGCCCTATGTTGATCATCGAACGGCTAAGAAGATCAGGAACGATGTGAACGTGCATAAGGACACATTGCGGCTGGAGGTAGATCAGTATAACCCTGATCAGCGCTTGGTTTCGTTCGTTTTCGATGCCTTGCATGATGGGAGCATTACTATTATCTACTTTGCAAAGGAGGAGGAGAAATGTAGGTTTGTTCCATTGTTTCCCAATGTATTTGAGCCAATAAGAATTCATTTTCAGAAAGGAATAGGCCAGAAATTTTGTCAGCCCTCAGGAACAGGCATTGACAAAGGGTTTTTCGAGTTGGATGATCTGTCAAAACGCTCACTTGGAGATGATGTCTTCCCCCTTGTGATATGTGCTGAAACATGTTTGATAACTTCATCAGCAGATGAAAATCTCAGCAATTCCATGCTAGATTTTTCTCCTTATATGCAGATTACTCAAGCCTTCATAGAGAAAGGCAATGGTGATGGTCCTTTACATGTAAAAGTAGACACGCAGATTCTGTGGATTGATGGGGTCCGTTATGAGTTAAGAGAGTTATATGGAATAGGAGGCTCAGCAGCGGCTGGTTTTGATGACAATGATTCTGGGAAGGAGTGTGTAATATGCATGACTGAACCAAAGGACACAGCTGTATTACCTTGTCGACACTTGTGCATGTGCAGTGACTGCGCACAAACTCTGTGGCTCCAATCAAATAAATGCCCAATATGCCGTCAATCTATCCAGGAACTTATAGAAATTAAGATAAACAATGTTGATTATTGGGATCTTAGTCAGGTGATGTATAGAATATTCCATTCTGTATATTGTGTTGATGTTCTGTTCATAGTCCTTATGTACTCAACAGAGCCTGGAGCTAATATTGCCTTGCAAGTTCAGAATCTTCTAATCATGTACAGGGCATAG 1257 0.4296 MGISSSSGRRSNYFHNPHLPAPFYYSAESPPPPPSLPPPQGYYFTSPTPYALQSNNYVPPPPQTHVFCYSNAYSNCSNYSDSMVVRFQYPPSYFLNHANGWAPIYPSVVGPVVSPPPYVDHRTAKKIRNDVNVHKDTLRLEVDQYNPDQRLVSFVFDALHDGSITIIYFAKEEEKCRFVPLFPNVFEPIRIHFQKGIGQKFCQPSGTGIDKGFFELDDLSKRSLGDDVFPLVICAETCLITSSADENLSNSMLDFSPYMQITQAFIEKGNGDGPLHVKVDTQILWIDGVRYELRELYGIGGSAAAGFDDNDSGKECVICMTEPKDTAVLPCRHLCMCSDCAQTLWLQSNKCPICRQSIQELIEIKINNVDYWDLSQVMYRIFHSVYCVDVLFIVLMYSTEPGANIALQVQNLLIMYRA 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco01g0864 418 PANTHER MAHOGUNIN 52 368 IPR045194 GO:0061630
Acco01g0864 418 Pfam Zinc finger, C3HC4 type (RING finger) 314 360 - -
Acco01g0864 418 ProSiteProfiles Zinc finger RING-type profile. 316 355 IPR001841 -
Acco01g0864 418 FunFam probable E3 ubiquitin-protein ligase LOG2 300 365 - -
Acco01g0864 418 SUPERFAMILY RING/U-box 310 362 - -
Acco01g0864 418 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 305 373 IPR013083 -
Acco01g0864 418 SMART ring_2 316 354 IPR001841 -
Acco01g0864 418 CDD mRING-HC-C3HC5_MGRN1-like 314 355 IPR045195 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco01g0864 Acco-ChrAcco01 10284642 10290470 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco01g0864 90 370 C3H Transcription Factor Family AT3G06140 59.722 2.25e-107 319