Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco01g0858 ATGGCACTCCTGCAAAATTCACAAGTTGTGCTTTCCAGATTGTTCGCCATTTCAAAATTATCAATCTCCAATACTCTGTTTCTAAAACTCCCACTGTATCCTATGTGTACTTCACTGTCAATGTCGATTCCTGCCTCATCCCCAACTCTTCGCTGCGGCCCCATTTCAGTTTTTTGCTGCAGCTGCAGTTTCAGCTCCAATTCCAAGGCGGAATTCAGTATTCCTCCTCCATCCAAACTCTTCATTAAAGGGCTTCCTCTGTCAACTTCGGAAGGACGTTTGGTTAAGGCATTTTCAGAGTTTGGTGAAGTCAGTCAAGTCAAGCTGCTCCTGGATAAAGAATCTGGGCAGTTCCTAGGCGTTGCGTACATTTGGTTTGCCAAGGAAGAGTCTGCACATTTGGCTGTGGAAAAGATGAATGGGAAGTTCTTTGATGGCAGGTTTATTTATGTCAGAATTTCGAAGGCTGGATCATCAAAAAAGCGGAGGAACAAAGCTCCATACAAGTTTTAA 513 0.4366 MALLQNSQVVLSRLFAISKLSISNTLFLKLPLYPMCTSLSMSIPASSPTLRCGPISVFCCSCSFSSNSKAEFSIPPPSKLFIKGLPLSTSEGRLVKAFSEFGEVSQVKLLLDKESGQFLGVAYIWFAKEESAHLAVEKMNGKFFDGRFIYVRISKAGSSKKRRNKAPYKF 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco01g0858 170 SMART rrm1_1 79 152 IPR000504 GO:0003723
Acco01g0858 170 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 80 149 IPR000504 GO:0003723
Acco01g0858 170 Gene3D - 63 167 IPR012677 -
Acco01g0858 170 CDD RRM_SF 80 152 - -
Acco01g0858 170 SUPERFAMILY RNA-binding domain, RBD 71 163 IPR035979 GO:0003676
Acco01g0858 170 PANTHER RNA-BINDING MOTIF PROTEIN, X-LINKED 2 78 164 - -
Acco01g0858 170 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 78 156 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco01g0858 Acco-ChrAcco01 10181176 10183711 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco01g0858 64 161 Eukaryotic Initiation Factors Gene Family AT2G36660 28.571 1.81e-08 50.8