Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco01g0793 ATGCCTATAATTCGAAGCCTGATCCACGATATGAGATCCAGGTCGCGCCGTGTGGTGCAGGACGGTTCCTCAATGGTGGAGCCTAGAACTGATGGCTTGAAGCAGAGTTCCTGGGCCAACATGCCTCAGGAGCTTCTCAGGGAGGTTTTACTCCGAATTGAGGACTCCGAGAGCTCTTGGCCACCGCGCAAGAGTGTGGTGGCCTGCGCTGGAGTCTGCCGGAGTTGGAGGGAGATCACCAAGGAGATCGTCAAGCCCCCTGAAGTTTCCGCCAAGATCACGTTCCCGATCTCCGTCAAGCAGCCTGGCCCTAGAGATAATCTTCTTCAGTGCTTTATAAAGCGCAAGCGCTCTTCCCAAACATATTATTTGTTTCTCAGTTTAACTAGTGCTCTAGCTGATGATGGGAAGTTCCTTTTGGCTGCACACAAGTGCAGGCGTCCAACCTGCACAGATTATGTCATCTCTCTAAATGCTGATGATATGTCAAAGGGAAGCTACACCTATATTGGGAAGCTTCGGTCAAATTTTCTGGGGACAAAGTTCACAATATATGACGGCCAGCCACCTCATGCAGGTGCAAAACTTTCGAAAAGTCGCTCCACTAGGCTGGTGAATTTGAAGCAAGTTTCACCCAGAGTCCCCACTGGTAACTATCCAGTGGCCCACATTTCATATGAATTAAATGTGTTAGGCTCCAGGGGGCCTAGGAGAATGAATTGTGTCATGGATTCCATTCCTGCCTCTGCAATTGAACCAGGAGGAGTAGCGCCAACACAGACCAACTTTTCTCTAAGCAGCATTGATGTGTTTCCTTCATTTCCATTTTTCCGATCAAAATCAAAGCATATGGAAAAATCTGAATCTGGATCCCTGGGCGAACAAAAAGAAGGGGTGCTATAG 903 0.485 MPIIRSLIHDMRSRSRRVVQDGSSMVEPRTDGLKQSSWANMPQELLREVLLRIEDSESSWPPRKSVVACAGVCRSWREITKEIVKPPEVSAKITFPISVKQPGPRDNLLQCFIKRKRSSQTYYLFLSLTSALADDGKFLLAAHKCRRPTCTDYVISLNADDMSKGSYTYIGKLRSNFLGTKFTIYDGQPPHAGAKLSKSRSTRLVNLKQVSPRVPTGNYPVAHISYELNVLGSRGPRRMNCVMDSIPASAIEPGGVAPTQTNFSLSSIDVFPSFPFFRSKSKHMEKSESGSLGEQKEGVL 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco01g0793 300 Gene3D - 31 83 - -
Acco01g0793 300 CDD F-box_AtTLP-like 38 82 - -
Acco01g0793 300 PANTHER TUBBY-RELATED 30 264 - -
Acco01g0793 300 SUPERFAMILY Tubby C-terminal domain-like 87 268 IPR025659 -
Acco01g0793 300 Gene3D Tubby Protein; Chain A 98 292 IPR025659 -
Acco01g0793 300 Pfam Tub family 99 281 IPR000007 -
Acco01g0793 300 SUPERFAMILY F-box domain 31 81 IPR036047 GO:0005515
Acco01g0793 300 PRINTS Tubby superfamily signature 218 245 IPR000007 -
Acco01g0793 300 PRINTS Tubby superfamily signature 169 193 IPR000007 -
Acco01g0793 300 PRINTS Tubby superfamily signature 153 169 IPR000007 -
Acco01g0793 300 Pfam F-box domain 38 84 IPR001810 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco01g0793 Acco-ChrAcco01 9200217 9202562 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco01g0793 12 300 TUB Transcription Factor Family AT2G47900 69.178 2.34e-136 390
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Acco01g0793 Tub 2.6e-57 CL0395