Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco01g0787 ATGCATATATTCGCTGATGTTCCGGCGGGTAATCCTTTCCCTGCTGTTGAAGCTCTCACATTTTTGTTCTTTACGCATAATGGCTCCATTCCTCTTTGGGAATCACGACAATTCTATCCCACTCTTCTTTCCAGATCAGGAAACCCTTCCTCTTCCCATTCCCCTTCCCTCAGAGCCTTCCCTTTTCCCTCTCTTCCAAAGCTCTTGGAAATGGAAGGCTCTGATGACAATGAACGCCTTCACTTCGGCAAGATGGGATACGGATGCAAGCATTATAGGAGAAGATGTATGATTCGAGCTCCTTGTTGCAATGAGATTTACTGGTGTCGTCATTGTCATAACGAGGCGGCGAGCATGTTGAGAAATATCTATGATCGGCATGAACTAGTCCGCCAAGATGTTGAACAAGTTGTTTGTGCAGTTTGCGACACGGAACAGCCGGTTGCTCAAGTTTGCACAAACTGTGGTGTCATGATGGGAGAATATTTCTGTGACATCTGCAAATTCTTTGATGATGATACTGGGAAACAGGAGTTTCATTGTGATGATTGTGGGATCTGTAGAGTTGGTGGCCGTCAGAATTATTATCATTGCAAGAAGTGCGGAACCTGTTATTCGGTGGCCCTGCGTGATAATCATTCTTGTGTAGAGAACTCTATGAGGCATCACTGTCCAATTTGTTATGAGTACCTTTTTGATTCATTGAAAGACACTACTGTAATGAAATGTGGTCACACAATGCATTGTGAGTGTTACGAAGAGATGATAAATCATGAAAAGTATTGTTGCCCCATATGCTCCAGGTCAGTGAAGGATATGTCCAGTATTTGGAAGAGAATTGATGAAGAGATTCAAGAAACAGCCATGCCCGAAGATTATAGGGGCTGGAAGGTTTGGATACTATGCAATGACTGCAATGACACAACTGAAGTGTACTACAACATTATTGGGCAAAAATGCGGTCACTGCAGATCCTATAATACTCGCACAATTGCTCCTCCTGTTCTTCCTCAATGA 1017 0.4326 MHIFADVPAGNPFPAVEALTFLFFTHNGSIPLWESRQFYPTLLSRSGNPSSSHSPSLRAFPFPSLPKLLEMEGSDDNERLHFGKMGYGCKHYRRRCMIRAPCCNEIYWCRHCHNEAASMLRNIYDRHELVRQDVEQVVCAVCDTEQPVAQVCTNCGVMMGEYFCDICKFFDDDTGKQEFHCDDCGICRVGGRQNYYHCKKCGTCYSVALRDNHSCVENSMRHHCPICYEYLFDSLKDTTVMKCGHTMHCECYEEMINHEKYCCPICSRSVKDMSSIWKRIDEEIQETAMPEDYRGWKVWILCNDCNDTTEVYYNIIGQKCGHCRSYNTRTIAPPVLPQ 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco01g0787 338 Pfam Zinc-ribbon 272 329 IPR039512 -
Acco01g0787 338 SMART ring_2 224 266 IPR001841 -
Acco01g0787 338 ProSiteProfiles Zinc finger CHY-type profile. 82 157 IPR008913 GO:0008270
Acco01g0787 338 Pfam Zinc finger, C3HC4 type (RING finger) 224 266 IPR018957 GO:0046872
Acco01g0787 338 SUPERFAMILY CHY zinc finger-like 86 158 IPR037274 GO:0008270
Acco01g0787 338 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 77 335 - -
Acco01g0787 338 Pfam CHY zinc finger 89 169 IPR008913 GO:0008270
Acco01g0787 338 SUPERFAMILY Zinc hairpin stack 160 217 IPR037275 -
Acco01g0787 338 Gene3D - 296 333 - -
Acco01g0787 338 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 207 294 IPR013083 -
Acco01g0787 338 ProSiteProfiles Zinc finger CTCHY-type profile. 159 223 IPR017921 -
Acco01g0787 338 SUPERFAMILY RING/U-box 223 274 - -
Acco01g0787 338 ProSiteProfiles Zinc finger RING-type profile. 224 267 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco01g0787 Acco-ChrAcco01 9128466 9131729 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco01g0787 84 337 C2H2 Transcription Factor Family AT3G18290 36.923 5.54e-51 180