LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Acco01g0777	ATGTCCACCTCTAGAACCCTAGATTCTTCCTCTTCTTCATCTTCTCCATCACCATCTTTCAAAGGCTATGAAGCAAACCAGACCCAGATGGTTCTGTCTCTTCTTCAGAGAAACACATCTCCTTGTGCAGGTGAGAAAAGAGGAAGACGAAAGCAATCAGAACCAGGAAGGTTTCTTGGTGTTAGAAGAAGACCTTGGGGAAGATATGCTGCAGAAATAAGGGACCCCACAACAAAAGAAAGGCATTGGCTTGGAACTTTTGACACTGCACAAGAAGCTGCTCTGGCTTATGACAGAGCTGCTCTGTCCATGAAAGGAAGCCAAGCAAGAACAAATTTCATATACTCTGACACTAACAACAGCACTTCTTTTCACACTCTTCTTTCTCCTTTAGATGTTCAAGCTCTTTTACCAACAACCTATCAGAGTAGTGCTAGTGTAGTAGTATCTGATATGTCTCATCTTAATACTTCTAATTCCATTTCCACCCACCTTCATCATCAGATTGAGCCTAATCTTCCTCCTACCCAGATGAACAATGATATGCCTGAAACTGAGAACTCTTTCTTGTTTTCCAGTGATTCTAACTCAGGATACCTGGAATGTGTGGTTCCTGATAACTGTCTCAGAAGGAACAATGAGAGTGCTTCAAATGACCAAAAGGACCAATATCAAAAACAAGAAGGCATCGATAAAATACCAACTGGGGGCTGTGGAAGTTCAGATTTTTCTTCATACCCAGATGAAATCTCTCAGGGACTGTCATGGGATCCTGATTTCAGTGAGCTTTCTGCTATTTTCAAGAGGAACGACACAATGAGGGTTGAAGAAGAAGATGGGTGCTTCTTTGGGAGTACAGGGATTAGTTCAAGCTTTGGACTAATGACTGAACAATATGCTTCTGCTTCAGCTTCTTCTTCTTCTTCTTCATATGCCTTTGGAGATGTTGATATGGGACATTCAATGTTCTGA	972	0.4167	MSTSRTLDSSSSSSSPSPSFKGYEANQTQMVLSLLQRNTSPCAGEKRGRRKQSEPGRFLGVRRRPWGRYAAEIRDPTTKERHWLGTFDTAQEAALAYDRAALSMKGSQARTNFIYSDTNNSTSFHTLLSPLDVQALLPTTYQSSASVVVSDMSHLNTSNSISTHLHHQIEPNLPPTQMNNDMPETENSFLFSSDSNSGYLECVVPDNCLRRNNESASNDQKDQYQKQEGIDKIPTGGCGSSDFSSYPDEISQGLSWDPDFSELSAIFKRNDTMRVEEEDGCFFGSTGISSSFGLMTEQYASASASSSSSSYAFGDVDMGHSMF	323

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Acco01g0777	323	Pfam	AP2 domain	60	106	IPR001471	GO:0003700\|GO:0006355
	Acco01g0777	323	Gene3D	AP2/ERF domain	57	115	IPR036955	GO:0003700\|GO:0006355
	Acco01g0777	323	SUPERFAMILY	DNA-binding domain	58	115	IPR016177	GO:0003677
	Acco01g0777	323	CDD	AP2	57	113	IPR001471	GO:0003700\|GO:0006355
	Acco01g0777	323	ProSiteProfiles	AP2/ERF domain profile.	57	114	IPR001471	GO:0003700\|GO:0006355
	Acco01g0777	323	FunFam	Ethylene-responsive transcription factor 2	57	115	-	-
	Acco01g0777	323	MobiDBLite	consensus disorder prediction	1	28	-	-
	Acco01g0777	323	PANTHER	AP2 DOMAIN CLASS TRANSCRIPTION FACTOR	40	223	-	-
	Acco01g0777	323	PRINTS	Ethylene responsive element binding protein signature	58	69	IPR001471	GO:0003700\|GO:0006355
	Acco01g0777	323	PRINTS	Ethylene responsive element binding protein signature	80	96	IPR001471	GO:0003700\|GO:0006355
	Acco01g0777	323	SMART	rav1_2	57	120	IPR001471	GO:0003700\|GO:0006355
	Acco01g0777	323	MobiDBLite	consensus disorder prediction	213	238	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Acco01g0777	Acco-ChrAcco01	8986119	8987090	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Acco01g0777	1	316	AP2-EREBP Transcription Factor Family	AT5G18560	36.364	5.12e-60	194

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Acco01g0777		AP2	1.5e-12	CL0081