Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco01g0776 ATGGAGCGGTACGGCCGGACTAGTGAAGGGTCGCAGTCTGATCCGTCACCGGAATGGACCGGAGCTGGAGGCGAAACAGGGCCCGAAGAGCCAGTGTGGCAAATGGAATTGGGTGGCGGTGAATCGTACCCGCAACGGCCCGATGAAGCTGATTGTATTTACTATTTGAGGACTGGTTATTGTGGGTACGGCCCGCGATGTCGGTTCAATCATCCCCGAGACCGTGGCGCGGTTATGGGAGCTGTGAGGACTGGAGCGGAGTACCCAGAACGATCAGGCCAGCCTGTATGCCAGTATTATATGAGGACAGGATCTTGCAAATTTGGCCCGTCCTGCAAGTATCACCATCCTAGGCAGGGAGGAGGCACTGTTAACCCAGTGTCACTGAATTATTATGGATTTCCATTGCGACCGGGTGAGAAAGAGTGTTCCTATTATGTGAAAACGGGACAATGCAAGTTTGGCGCAACTTGTAAATTCCACCATCCACAGCCTGATGGCATGCCAATTGCGGCACAATCACCAGTTCCCCCGGTTTCACCTCTACCTGTACCAGTGCCTTCACAGTTATATCCAACTGTACAGCATCCATCTGGCCCTTCATCGTCACAATATGGTGTAATGGTTGCAACTCCAAGGCCACCTCTGCTACCTGGCTCATTAGTCCATAGTTCCTATGGGCATGTGGTTTTGTCCCCAGCTGTAGTCCCTTTTCCAGGTTGGGGTCCTTATCAGCCTCCTGCTAGCCCCTTAGTTCCCTCTAGTACTCCATCTAATGTTGGGTCAGCACAGCTTTATGGGATAGGACAGCTACCTTCGCCAGCGTCAACTTATTATGGACAGTATCAACCTTCAGGCTCCTCAGTTGGTACTTCGGGCAGTAGTCAGAAGGAGCACTCATTTCCAGAAAGACCTGGTCAGCCTGAATGTCAGTATTATATGAAAACGGGGGAGTGTAAATTTGGTCCATCATGTAGATATCATCATCCACCTGAATTTGTTGCTCCGAAAACAAATGTGGTCCTTAGTCCTGTGGGCCTTCCTTTGCGCCCGGGTGCACCTCCTTGCACTCATTATGCACAGCGTGGGGTGTGTAAATTTGGCCCGGCATGCAAATTTGATCATCCTATTGGAGCACTGAGCTATAGTCCGTCTGCTTCCTCCCTAGCTGATATGCCAGTTGCACCCTATCCTGTGGGCTCATCAATTGGCACTCTTGCTCCGTCATCTTCATCATCAGAATTGCGACCTGAACTCGCCTCAGGATCTGGCAAGGAATCTTCATCATCCAGAATATCTTCATCAATGAGCACATCAACGGCATCAATTGGATTAACCTTGTCATCTGGTGGATCCATTTCTCAATCAACTGCTCAACAATCTGCTCAGAGTTCCAGTCCTTCAGCAATCACCAATAACACCACAAGCAGCTCCGTCTCTCACACCTCTAGTTAA 1455 0.501 MERYGRTSEGSQSDPSPEWTGAGGETGPEEPVWQMELGGGESYPQRPDEADCIYYLRTGYCGYGPRCRFNHPRDRGAVMGAVRTGAEYPERSGQPVCQYYMRTGSCKFGPSCKYHHPRQGGGTVNPVSLNYYGFPLRPGEKECSYYVKTGQCKFGATCKFHHPQPDGMPIAAQSPVPPVSPLPVPVPSQLYPTVQHPSGPSSSQYGVMVATPRPPLLPGSLVHSSYGHVVLSPAVVPFPGWGPYQPPASPLVPSSTPSNVGSAQLYGIGQLPSPASTYYGQYQPSGSSVGTSGSSQKEHSFPERPGQPECQYYMKTGECKFGPSCRYHHPPEFVAPKTNVVLSPVGLPLRPGAPPCTHYAQRGVCKFGPACKFDHPIGALSYSPSASSLADMPVAPYPVGSSIGTLAPSSSSSELRPELASGSGKESSSSRISSSMSTSTASIGLTLSSGGSISQSTAQQSAQSSSPSAITNNTTSSSVSHTSS 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco01g0776 484 Gene3D - 303 387 - -
Acco01g0776 484 Gene3D - 44 123 - -
Acco01g0776 484 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 139 164 IPR000571 GO:0046872
Acco01g0776 484 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 306 331 IPR000571 GO:0046872
Acco01g0776 484 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 353 376 IPR000571 GO:0046872
Acco01g0776 484 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 48 73 IPR000571 GO:0046872
Acco01g0776 484 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 93 118 IPR000571 GO:0046872
Acco01g0776 484 MobiDBLite consensus disorder prediction 279 301 - -
Acco01g0776 484 PANTHER PROTEIN PHOSPHATASE RELATED 28 413 - -
Acco01g0776 484 SUPERFAMILY CCCH zinc finger 354 380 IPR036855 GO:0046872
Acco01g0776 484 ProSiteProfiles Zinc finger C3H1-type profile. 91 119 IPR000571 GO:0046872
Acco01g0776 484 ProSiteProfiles Zinc finger C3H1-type profile. 304 332 IPR000571 GO:0046872
Acco01g0776 484 MobiDBLite consensus disorder prediction 1 44 - -
Acco01g0776 484 ProSiteProfiles Zinc finger C3H1-type profile. 46 74 IPR000571 GO:0046872
Acco01g0776 484 FunFam CCCH type zinc finger protein 302 387 - -
Acco01g0776 484 SUPERFAMILY CCCH zinc finger 48 74 IPR036855 GO:0046872
Acco01g0776 484 ProSiteProfiles Zinc finger C3H1-type profile. 137 165 IPR000571 GO:0046872
Acco01g0776 484 SMART c3hfinal6 91 118 IPR000571 GO:0046872
Acco01g0776 484 SMART c3hfinal6 46 73 IPR000571 GO:0046872
Acco01g0776 484 SMART c3hfinal6 350 377 IPR000571 GO:0046872
Acco01g0776 484 SMART c3hfinal6 137 164 IPR000571 GO:0046872
Acco01g0776 484 SMART c3hfinal6 304 331 IPR000571 GO:0046872
Acco01g0776 484 SUPERFAMILY CCCH zinc finger 94 119 IPR036855 GO:0046872
Acco01g0776 484 MobiDBLite consensus disorder prediction 279 307 - -
Acco01g0776 484 SUPERFAMILY CCCH zinc finger 140 166 IPR036855 GO:0046872
Acco01g0776 484 Gene3D - 124 169 - -
Acco01g0776 484 ProSiteProfiles Zinc finger C3H1-type profile. 350 378 IPR000571 GO:0046872
Acco01g0776 484 MobiDBLite consensus disorder prediction 406 484 - -
Acco01g0776 484 SUPERFAMILY CCCH zinc finger 308 331 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco01g0776 Acco-ChrAcco01 8975833 8980815 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco01g0776 1 426 C2H2 Transcription Factor Family AT5G18550 58.447 5.86e-152 439
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Acco01g0776 zf-CCCH 3.7e-08 CL0537