Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco01g0742 ATGAATAAGAATGCGTTATCTTCTCGACGCGTTGCTTTTCCGGCTGGTCTCCGAGTTCTCGTCGTCGACGATGATTTGACATGGCTCAGGATTCTTGAGATGATGCTGAAGAAGTGCTCTTACGAAGTAACCACATGCTGTCTAGCAAGAGAGGCTCTAAATTTGCTTCGTGAAAAGAAAGATGGATATGACATTGTAATCAGCGATGTAAATATGCCGGACATGGATGGTTTCAAGCTTCTCGAGCATGTTGGACTCGAGATGGATCTTCCTGTGATCATGATGTCTGTGGATGGAGAGACTAGCAGGGTGATGAAGGGTGTTCAGCATGGAGCATGTGATTACCTCCTCAAGCCTATAAGGATGAAAGAGCTGCGAAATATATGGCAACACGTGTTCAGGAAAAGGATGCGCGAGGCAAGAGAATTTGGGAGCCTTAAGGGTTTTGAGGGCTTTCAGTTAATGAGTAATGGAGCAGATCAGTATGATGAGGGGAACTTGTTTGCTATAGAAGATATGACCTCAACAAAGAAAAGGAAAAGCTCAGATAGCAAACGTGATAACAACGAATTTGCAGACCAATCTTCTACAAAGAAATCCAGAGTAGTTTGGTCAGTGGATCTTCACCAGAGCTTTGTCAAGGCTGTGAATGAGCTTGGATTTGATAAAGTTGGTCCCAAGAAAATACTTGATTTGATGAATGTTCCATGGTTGACTCGAGATAATGTTGCGAGCCACTTACAGAAATACCGGCTCTATTTGAGCAGGTTGCAGAAGGCTGGAGATCAAAATTCTTCCTCAAGTGGGATTCAACAATCCGATTTAGTTTCAAAAGAGCCTGCAGCAAGTTTTTCTTTTCAGAACCCAATAAACAGGCAACAACAAAATGATGTTTCAATTGACAGCCATAAATATTCATCAGGTGGAACGTTACAACTTCAGGATGTGGATGCTGAAATAAGTCATGAAAGTAATAATCTCAAGGGGATCATCTCAGAGGCTACAATGGATAAAAGAACAGATTTGCCTACAAGAAAGAGTGCGCAGACGATCAATGATCAGTCTTTTGCAACTCCAGATTCAGAAGTAAGCCACGCAGCAGTATTCAAGCGCACCAACCCTTGGAGGGAATTCCCAGAAATGCAACTCAAAAAACACCAGCCCAATCTTCCAATGAAGGATCGCTTCAGCCACTTGCCATTACCTGATACAGAGCATCTCATCCAGGTTGTTGATCAATCACAAGCAGATGCTTCAATTCGATCCAACCCATCAGTTATGGAGAGAGAAACTGCTTCCTGCATTGAAACCAACCCTTTGTATGCTGCTGATCACACCAGCGATTATGCTAGTTCTGTTACTTCCCTAGGAAGTGCTGGAGGTTTTTCCATGCAGTCCTATGCTGCTGATCACACCAGCGATTATGCCAGTTCTGTTACTTCCATACGAAGTGCTGGAGGTTTTTCCATGCAGTCCAAGAGCTTTTTGGGGACGGATGAATCTTTAGAATTTGTTTCTACTTCGAATTTCGGCAGGAAAGCAGAGGGACTTAACTCTGTTTCTGACCTGGAATTTCACCAACGAGATCTACTTTTAGGAGGTGAGTTCCCTTCTTCTGCTGCACCTTTGGAGGAGGACTTGAAATCCTTTTGGCTACAAGGTGAACGCTGTATGAACTCTGGACTGCAGAATATAGAGATGCCAGAGTATTATTATGATCCAGGACTTAATGGGGAAATTCCAATTCATTTGTTCGATACAGCTGAAATTCAGCAGTAG 1779 0.4311 MNKNALSSRRVAFPAGLRVLVVDDDLTWLRILEMMLKKCSYEVTTCCLAREALNLLREKKDGYDIVISDVNMPDMDGFKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKRMREAREFGSLKGFEGFQLMSNGADQYDEGNLFAIEDMTSTKKRKSSDSKRDNNEFADQSSTKKSRVVWSVDLHQSFVKAVNELGFDKVGPKKILDLMNVPWLTRDNVASHLQKYRLYLSRLQKAGDQNSSSSGIQQSDLVSKEPAASFSFQNPINRQQQNDVSIDSHKYSSGGTLQLQDVDAEISHESNNLKGIISEATMDKRTDLPTRKSAQTINDQSFATPDSEVSHAAVFKRTNPWREFPEMQLKKHQPNLPMKDRFSHLPLPDTEHLIQVVDQSQADASIRSNPSVMERETASCIETNPLYAADHTSDYASSVTSLGSAGGFSMQSYAADHTSDYASSVTSIRSAGGFSMQSKSFLGTDESLEFVSTSNFGRKAEGLNSVSDLEFHQRDLLLGGEFPSSAAPLEEDLKSFWLQGERCMNSGLQNIEMPEYYYDPGLNGEIPIHLFDTAEIQQ 592
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco01g0742 592 Pfam Response regulator receiver domain 19 128 IPR001789 GO:0000160
Acco01g0742 592 FunFam Two-component response regulator 195 258 - -
Acco01g0742 592 Gene3D - 200 258 - -
Acco01g0742 592 CDD REC_typeB_ARR-like 19 133 - -
Acco01g0742 592 Gene3D - 17 199 - -
Acco01g0742 592 ProSiteProfiles Response regulatory domain profile. 18 133 IPR001789 GO:0000160
Acco01g0742 592 PIRSF RR_ARR_type-B 1 588 IPR017053 GO:0003677|GO:0003700|GO:0009736
Acco01g0742 592 SUPERFAMILY CheY-like 16 140 IPR011006 -
Acco01g0742 592 PANTHER TWO-COMPONENT RESPONSE REGULATOR 17 304 IPR045279 GO:0009736
Acco01g0742 592 Pfam Myb-like DNA-binding domain 201 251 IPR001005 -
Acco01g0742 592 SUPERFAMILY Homeodomain-like 197 256 IPR009057 -
Acco01g0742 592 MobiDBLite consensus disorder prediction 175 194 - -
Acco01g0742 592 SMART REC_2 17 129 IPR001789 GO:0000160
Acco01g0742 592 NCBIfam myb-like DNA-binding domain, SHAQKYF class 199 252 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco01g0742 Acco-ChrAcco01 8509543 8513160 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco01g0742 13 263 Response Regulator Gene Family AT2G25180 54.475 2.52e-82 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Acco01g0742 Response_reg 2.8e-23 CL0304