Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco01g0698 ATGGAAATTGCGGAGGTTGAAGAAAATATGTTCGCAGCAAGTGATGCTAAGTTACATGGAGAGTTGTGTAAGGCTCTTTCAACAACATATTGCAAAGTATTGTCGATATTTCCATCTATGGAAGCAGCTAGGCCCAGGAGCAAATCAGGGATCCAGGCACTATGTTCATTGCACGTGGCATTAGAGAAGGCCAAGAATGTTCTTCAGCATTGTTCAGAGTGTAGTAAGCTTTATTTGGCTATAACTGGTGATTCTGTTCTTCTAAAATTTGAGAAAGCTAAATGTGCTCTTGAAAATAGTCTTAAAAGGGTGGAAGACATTGTTCCACAATCTATTGGATGTCAGATTGAAGAGATTGTGAGTGAACTTGAAAGTATGGAATTGGCACTTGACCCCATGGAGAAGCAAATTGGCGATAATTTAATTGCTTTGCTCCAGCAAGGGAGAAAGTTCAACGACTCTACTGACAGTAGTGAGCTTGAATGTTTTCACCAGGCTGCTACTAGACTAGGAATCACTTCTTCTAGAGCAGCTCTCACTGAAAGAAGAGCTCTCAAGAAACATATTGAAAGAGCTCGAGCTGAAGATGACAAGCGGAAGGAATCAATTGTTGCCTATCTTTTACACCTTATGAGGAAATACTCTAAGTTATTTCGAAGTGAGTTTTCGGATGATAATGATTCTCAGGGTTCTGCTCCCTGTTCTCCCTCTGTTATGGGCTCCATGGAAGATGGTGTAGCTGGTGGTCATTACCAGGCCTTTGACCGACAGCTCTCAAAACTTAGTTCTTTTAATTTCAAGCCAAATAATAGAAATTTGGGGCAAATTCCCCTTCCCCCTGAGGAGTTAAGGTGTCCAATATCTCTCCAACTTATGTATGATCCTGTTATAATTGCTTCTGGTCAAACTTATGAGAGGGTTTGCATAGAGAAATGGTTCCGTGATGGGCATGACACCTGCCCAAAGACTCAACAGAAACTTACACATCTATCACTGACCCCTAATTACTGTGTTAAGGGTCTTGTTGCTAGTTGGTGTGAACAAAATGGAGTTCCTATTCCTGATGGCCCTCCGGAATCTCTTGACTTTAACTACTGGAGATTAGCATTATCTCAGTCTGAATCAACAAATTCAAGATCAATGAACAGTGTCAACTCCTGCAAATTGAAGGGCGTCAAAGTGGTACCTATAGAAGAGACGGGGGTCTCACATGAAGCCGGAGAAAATGGAACTGAAAGTGTGTATGCACAAGAGGAAGATACTGAGCAGTATCTTAGTTTTCTGAAAGTCTTGACTGAAGGGAACAGTTGGAAAAAGAAATGTAAAGTGGTAGAAAGGTTAAGGCTTTTGCTGAGGGATGATGAAGAAGCCAGGATTTTTATGGGGGCAAATGGGTTTGTTGAAGCACTTCTGCAGTTTCTGCAATCAGCAGTGTCCGAAGGGAATGTGCCAGCTCAAGAAAGTGGGGCAATGGCCCTCTTCAACCTTGCTGTGAATAACAACAGGAATAAGGAAATCATGTTAGCAGAAGGAGTATTATCATTGCTAGAGCAAATGATCTCTAATTCCTACTCTTATGGCTGTGCAACGGCCCTCTATCTGAATCTGTCTTGCCTTGAAGAAGCCAAGCCTATGATTGGAACGAGTCAGGCTGTCCAGTTCCTCATCCAGCTCCTCTGTCAACCTGACGTTGAAGTCCTGTGCAAGCAAGATTCCCTTCATGCACTGTATAATCTATCCACTGTACCCTCCAATATCCCAAACCTCCTTTCGTTTGGCATCATCAATGGCCTCCAATCCCTCCTTGCAGGCCAGGGTGATTGTTTGTCGATGGAAAAATGCATAGCTATTTTGATCAATTTGGCTTCTTCTCAGTTGGGAAGGGAGGAGATGATATCGTCTCCGGGGCTCATAGGCTCGTTGGCCTCCATATTGGACACCGGTGAGATCGTAGAGCAAGAGCAAGCTCTATCTTGTCTATTAATTTTATGTAGAAGGAATGAAGTATGTAGTCAGATGGTCCTGCAAGAAGGCGTAATACCTGCCTTGGTTTCATTATCAGTGAACGGCACCTCAAGAGGAAGAGAGAAAGCTCAGAAACTCTTGATGCTGTTCAGAGAGCAGCGGCAGCGAGACAATTCACCTCCTAAGACAAATCAGTTCCTGCCAGAAACTAGTGATATAGAGATGCCGCCGCTTCCCGAAACAAAACCTCTATGTAAGTCAATGTCTAGGAAAAAAATGGGGAGGGCTCTTAGCTTTATATGGAAAACCAAGAGCTATTCTGTTTACCAGTGTTAG 2301 0.4307 MEIAEVEENMFAASDAKLHGELCKALSTTYCKVLSIFPSMEAARPRSKSGIQALCSLHVALEKAKNVLQHCSECSKLYLAITGDSVLLKFEKAKCALENSLKRVEDIVPQSIGCQIEEIVSELESMELALDPMEKQIGDNLIALLQQGRKFNDSTDSSELECFHQAATRLGITSSRAALTERRALKKHIERARAEDDKRKESIVAYLLHLMRKYSKLFRSEFSDDNDSQGSAPCSPSVMGSMEDGVAGGHYQAFDRQLSKLSSFNFKPNNRNLGQIPLPPEELRCPISLQLMYDPVIIASGQTYERVCIEKWFRDGHDTCPKTQQKLTHLSLTPNYCVKGLVASWCEQNGVPIPDGPPESLDFNYWRLALSQSESTNSRSMNSVNSCKLKGVKVVPIEETGVSHEAGENGTESVYAQEEDTEQYLSFLKVLTEGNSWKKKCKVVERLRLLLRDDEEARIFMGANGFVEALLQFLQSAVSEGNVPAQESGAMALFNLAVNNNRNKEIMLAEGVLSLLEQMISNSYSYGCATALYLNLSCLEEAKPMIGTSQAVQFLIQLLCQPDVEVLCKQDSLHALYNLSTVPSNIPNLLSFGIINGLQSLLAGQGDCLSMEKCIAILINLASSQLGREEMISSPGLIGSLASILDTGEIVEQEQALSCLLILCRRNEVCSQMVLQEGVIPALVSLSVNGTSRGREKAQKLLMLFREQRQRDNSPPKTNQFLPETSDIEMPPLPETKPLCKSMSRKKMGRALSFIWKTKSYSVYQC 766
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco01g0698 766 SMART Ubox_2 282 345 IPR003613 GO:0004842|GO:0016567
Acco01g0698 766 SUPERFAMILY RING/U-box 279 355 - -
Acco01g0698 766 ProSiteProfiles U-box domain profile. 278 352 IPR003613 GO:0004842|GO:0016567
Acco01g0698 766 SMART arm_5 454 498 IPR000225 GO:0005515
Acco01g0698 766 SMART arm_5 539 581 IPR000225 GO:0005515
Acco01g0698 766 CDD RING-Ubox_PUB 280 332 IPR045210 -
Acco01g0698 766 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 278 352 IPR013083 -
Acco01g0698 766 Gene3D - 398 715 IPR011989 -
Acco01g0698 766 Coils Coil 175 195 - -
Acco01g0698 766 MobiDBLite consensus disorder prediction 708 740 - -
Acco01g0698 766 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 465 511 IPR000225 GO:0005515
Acco01g0698 766 PANTHER U BOX DOMAIN-CONTAINING 24 710 - -
Acco01g0698 766 FunFam RING-type E3 ubiquitin transferase 278 352 - -
Acco01g0698 766 Pfam U-box domain 280 349 IPR003613 GO:0004842|GO:0016567
Acco01g0698 766 SUPERFAMILY ARM repeat 427 707 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco01g0698 Acco-ChrAcco01 8176660 8180228 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco01g0698 1 765 U-box Gene Family AT1G24330 65.854 0.0 1021