Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco01g0694 ATGAGAGAAGCTCCCATAAAAGACGCAATGGTGAAGTACTCGAGGGAGCCGGACAATCCTACCAAGTCCTGCAAGGCTAGAGGCTCCGACCTCAGAGTCCACTTCAAGAATACTCGTGAAACTGCTTTTGCCATCAGGAAGTTGCCCTTGGTAAAGGCAAAGAGGTATTTGGAGGATGTTCTAGCCCACAAACAAGCCATTCCATTCCGAAGGTTCTGCCGCGGAGTTGGTAGGACAGCCCAGGCTAAGAATAGACATTCTAACGGGCAAGGACGCTGGCCTGTTAAATCAGCTAAATTTATCCTAGACTTGCTTAAGAATGCTGAGAGTAATGCTGAAGTGAAAGGTTTGGATGTCGATGCCCTCTATATTTCTCATATCCAGGTAAATCAAGCCCAAAAGCAAAGACGCCGCACCTACCGAGCTCATGGAAGGATCAACCCTTATATGTCATCTCCCTGCCATATTGAGCTTACTTTATCTGAGAAGGAAGAACCCGTCAGGAAGGAGCCCGATACTCAGTTGGCCACAAGTAAGAAATCTTAA 546 0.4707 MREAPIKDAMVKYSREPDNPTKSCKARGSDLRVHFKNTRETAFAIRKLPLVKAKRYLEDVLAHKQAIPFRRFCRGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLSEKEEPVRKEPDTQLATSKKS 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco01g0694 181 ProSitePatterns Ribosomal protein L22 signature. 136 160 IPR018260 GO:0003735|GO:0005840|GO:0006412
Acco01g0694 181 MobiDBLite consensus disorder prediction 162 181 - -
Acco01g0694 181 CDD Ribosomal_L22 24 160 IPR001063 GO:0003735|GO:0005840|GO:0006412
Acco01g0694 181 Hamap 50S ribosomal protein L22 [rplV]. 9 163 IPR005721 GO:0003735|GO:0006412|GO:0015934
Acco01g0694 181 NCBIfam 50S ribosomal protein L22 13 163 IPR005721 GO:0003735|GO:0006412|GO:0015934
Acco01g0694 181 SUPERFAMILY Ribosomal protein L22 10 163 IPR036394 GO:0003735|GO:0005840|GO:0006412
Acco01g0694 181 Pfam Ribosomal protein L22p/L17e 26 160 IPR001063 GO:0003735|GO:0005840|GO:0006412
Acco01g0694 181 Gene3D Ribosomal protein L22/L17 10 181 IPR036394 GO:0003735|GO:0005840|GO:0006412
Acco01g0694 181 PANTHER 60S RIBOSOMAL PROTEIN L17 10 180 IPR005721 GO:0003735|GO:0006412|GO:0015934
Acco01g0694 181 FunFam 60S ribosomal protein L17 10 181 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco01g0694 Acco-ChrAcco01 8083348 8088524 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco01g0694 10 180 Cytoplasmic Ribosomal Protein Gene Family AT1G27400 88.889 1.32e-115 323