Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco01g0670 ATGAGAAGTTATATCGCTGATATTAGGGTTTGCACTTTGCAAAGAGACTCAACACATAAACTGCCACCGGCGGCGTTGAGATCCTTTGCGCTACATCCATCCTTCACTACAACAATGGCGACTCAGATGAGCAAGAAGAGAAAGTTCGTCGCCGATGGCGTTTTCTTCGCCGAACTGAACGAGGTCCTGACCCGAGAGCTTGCCGAGGATGGATACTCTGGTGTTGAGGTTAGAGTTACTCCGATGCGCACTGAGATCATTATCAGAGCCACTCGAACCCAGAATGTGCTTGGTGAGAAGGGGAGGAGAATCAGGGAACTGACCTCAGTGGTACAGAAGAGATTTAAGTTTCCGGAGAATAGCGTGGAACTATATGCTGAGAAGGTGAACAACAGGGGTCTTTGTGCTATTGCTCAGGCTGAGTCTCTCCGCTATAAGCTTCTTGGTGGTCTTGCTGTGCGTAGGGCATGCTATGGTGTTTTAAGATTTGTGATGGAAAGTGGGGCAAAGGGGTGCGAGGTAATTGTAAGTGGAAAACTGAGGGCCCAGCGTGCCAAATCCATGAAGTTCAAGGATGGATACATGATTTCATCTGGTCAGCCAGTCAAGGACTACATTGATTCTGCAGTAAGACATGTGCTCCTCAGACAGGGGGTTCTTGGTATCAAGGTCAAGATCATGCTTGATTGGGATCCTAAGGGTAAGCAGGGTCCTAAAACACCCCTTCCTGATATTGTCACAATCCATCCTCCAAAGGAGGAGGAGGAATACATCCGGCCTGCTGCAATTGGGGCAGTCGTCACTGGGCCAGTCGCCGATGTGGATATCCCCACTGTGCTGGCGGCTTGA 849 0.4959 MRSYIADIRVCTLQRDSTHKLPPAALRSFALHPSFTTTMATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKDYIDSAVRHVLLRQGVLGIKVKIMLDWDPKGKQGPKTPLPDIVTIHPPKEEEEYIRPAAIGAVVTGPVADVDIPTVLAA 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco01g0670 282 Pfam KH domain 58 131 IPR004044 GO:0003723
Acco01g0670 282 FunFam 40S ribosomal protein S3 131 265 - -
Acco01g0670 282 Pfam Ribosomal protein S3, C-terminal domain 144 226 IPR001351 GO:0003735|GO:0006412
Acco01g0670 282 SUPERFAMILY Prokaryotic type KH domain (KH-domain type II) 48 137 IPR009019 GO:0003723
Acco01g0670 282 ProSitePatterns Ribosomal protein S3 signature. 185 221 IPR018280 -
Acco01g0670 282 Gene3D - 35 129 IPR015946 -
Acco01g0670 282 SUPERFAMILY Ribosomal protein S3 C-terminal domain 131 229 IPR036419 -
Acco01g0670 282 Gene3D - 131 257 IPR036419 -
Acco01g0670 282 CDD KH-II_40S_S3 43 133 - -
Acco01g0670 282 PANTHER 30S/40S RIBOSOMAL PROTEIN S3 44 236 - -
Acco01g0670 282 FunFam 40S ribosomal protein S3 39 130 - -
Acco01g0670 282 ProSiteProfiles Type-2 KH domain profile. 59 130 IPR004044 GO:0003723
Acco01g0670 282 NCBIfam 30S ribosomal protein S3 46 248 IPR005703 GO:0003735|GO:0006412|GO:0015935
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco01g0670 Acco-ChrAcco01 7814601 7818938 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco01g0670 39 282 Cytoplasmic Ribosomal Protein Gene Family AT5G35530 83.871 1.29e-152 424