Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco01g0619 ATGGTCGATCTGAGTGAAAAAGGATCGGAGGCAGAGGACACCAATAACAGAAGCCCTAACGGAGATTCGTCGGAAGAAAGTCCAATGAGCAACGAGCAGAAGAAAACCTGCGCCGACTGTGGCACATCCAAAACCCCTCTCTGGAGAGGCGGCCCGGCTGGTCCCAAGTCTCTGTGCAACGCGTGTGGGATCAGAAGCAGGAAGAAGAAGAGAGCGATTCTAGGCATGAGCAAGGGAAGTACAGAAGAGAAAAAGGGAAAAAGAAGCAGCAACAATGCTAAGATTGGGGATAGTTTGAAGCGGAGATTACTGGCTCTGGGAAGAGAGGTTTTGATGCAGAGATCAACGGTGGAGAGGCAGAGGAAGAAGCTGGGAGAGGAAGAACAAGCCGCCGTGTTGTTGATGGCTCTCTCATATGGCTCTGTTTATGCGTAA 435 0.508 MVDLSEKGSEAEDTNNRSPNGDSSEESPMSNEQKKTCADCGTSKTPLWRGGPAGPKSLCNACGIRSRKKKRAILGMSKGSTEEKKGKRSSNNAKIGDSLKRRLLALGREVLMQRSTVERQRKKLGEEEQAAVLLMALSYGSVYA 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco01g0619 144 CDD ZnF_GATA 36 71 IPR000679 GO:0006355|GO:0043565
Acco01g0619 144 ProSitePatterns GATA-type zinc finger domain. 37 62 IPR000679 GO:0006355|GO:0043565
Acco01g0619 144 SMART GATA_3 31 95 IPR000679 GO:0006355|GO:0043565
Acco01g0619 144 MobiDBLite consensus disorder prediction 1 97 - -
Acco01g0619 144 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 29 71 - -
Acco01g0619 144 ProSiteProfiles GATA-type zinc finger domain profile. 31 67 IPR000679 GO:0006355|GO:0043565
Acco01g0619 144 MobiDBLite consensus disorder prediction 75 95 - -
Acco01g0619 144 Gene3D - 31 95 IPR013088 GO:0006355|GO:0008270
Acco01g0619 144 PANTHER OS01G0976800 PROTEIN 3 144 - -
Acco01g0619 144 Pfam GATA zinc finger 37 71 IPR000679 GO:0006355|GO:0043565
Acco01g0619 144 MobiDBLite consensus disorder prediction 14 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco01g0619 Acco-ChrAcco01 7284311 7284948 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco01g0619 1 144 C2C2-Gata Transcription Factor Family AT3G06740 60.131 1.80e-53 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Acco01g0619 GATA 1.4e-16 CL0167