Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco01g0618 ATGGTGGTCGATCTGAGTGGAAAAGGATCGGAGGCCGAGGACGCCAATAACAGAAACCCTAACGGAGATTCATCGGAAGAAAGCCCAATGAGCAACGAGCAGAAGAAAACCTGCGCCGATTGTGGCACATCAAAAACCCCTCTCTGGAGAGGTGGTCCTGCCGGCCCCAAGTCTCTGTGCAACGCGTGTGGGATCAGGAGCAGGAAGAAGAAGAGAGCGATTCTAGGCATGAGCAAGGGAAGTACAGAAGAGAAAAAAGGTAAAAGAAGCAGCAACAATGCTAAGATTGGGGATAGTTTGAAGCGGAGATTAATGGCTCTGGGAAGAGAGGTTCTGATGCAGAGATCAACGGTGGAGAGGCAGAGGAAGAAGCTGGGAGAGGAAGAACAAGCCGCTGTGTTGCTGATGGCTCTCTCGTATGGCTCTGTTTATGGGTAA 438 0.5091 MVVDLSGKGSEAEDANNRNPNGDSSEESPMSNEQKKTCADCGTSKTPLWRGGPAGPKSLCNACGIRSRKKKRAILGMSKGSTEEKKGKRSSNNAKIGDSLKRRLMALGREVLMQRSTVERQRKKLGEEEQAAVLLMALSYGSVYG 145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco01g0618 145 MobiDBLite consensus disorder prediction 1 53 - -
Acco01g0618 145 Pfam GATA zinc finger 38 72 IPR000679 GO:0006355|GO:0043565
Acco01g0618 145 Gene3D - 32 96 IPR013088 GO:0006355|GO:0008270
Acco01g0618 145 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 30 72 - -
Acco01g0618 145 MobiDBLite consensus disorder prediction 12 41 - -
Acco01g0618 145 ProSitePatterns GATA-type zinc finger domain. 38 63 IPR000679 GO:0006355|GO:0043565
Acco01g0618 145 SMART GATA_3 32 96 IPR000679 GO:0006355|GO:0043565
Acco01g0618 145 CDD ZnF_GATA 37 72 IPR000679 GO:0006355|GO:0043565
Acco01g0618 145 ProSiteProfiles GATA-type zinc finger domain profile. 32 68 IPR000679 GO:0006355|GO:0043565
Acco01g0618 145 PANTHER OS01G0976800 PROTEIN 7 144 - -
Acco01g0618 145 MobiDBLite consensus disorder prediction 76 96 - -
Acco01g0618 145 MobiDBLite consensus disorder prediction 71 98 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco01g0618 Acco-ChrAcco01 7268951 7269601 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco01g0618 30 145 C2C2-Gata Transcription Factor Family AT3G06740 71.186 1.03e-51 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Acco01g0618 GATA 1.4e-16 CL0167