Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco01g0614 ATGAATCTGAGCAACGGCAAGGGATCTATGTCAACGGTTAGCTCTCCTGCGGTTTCCAAGTCCGGTGACATCATCTCCGACCAGTTCCCGGCGGGTCTCCGGGTACTGTTGGTGGATGATGATCCCACGTGCCTTATGATACTTGAAAAGATGCTTCGCACTTGCCTCTACCAAGTTACGAAATGCAATCGAGCAGAGATTGCGCTTTCACTTCTGAGAGAGAACAAAAATGGGTACGACATTGTTATTAGCGATGTACATATGCCAGACATGGATGGCTTCAAACTCTTAGAGCACATTGGGTTAGAGATGGACCTTCCCGTCCTCATGATGTCTGCAGATGATGGGATGAATGTTGTTATGAAAGGTGTGACTCACGGTGCTTGTGATTACCTTATCAAACCTGTGCGCATCGAGGCTCTAAAGAATATATGGCAACATGTGATTCGTAAGAGAAAGAATGAATGGAAGGATTTGGAGCAGTCAGGTAGTGCAGAAGAAGGAGATCAGAAACAAAAGCCAACTGATGAGGTGGATTACTCATCCTCTGCAAACGAAGGCAATTGGAGAAATGCAAAGAAGAGGAGGGATGAGGATGAAGAAGCAGAGGAAAGGGATGACTCATCCACGTTAAAGAAGCCACGAGTTGTTTGGTCAGTTGAGCTCCATCAACAGTTTGTGGCTGCTGTGAATCAGCTTGGAATTGATAAGGCGGTTCCCAAAAAAATTCTGGAATTGATGAATGTCCCTGGGCTCACTAGAGAAAATGTTGCTAGCCACCTCCAGAAATATCGCTTGTATCTCCGAAGGTTGAGTGGAGTTTCTCAACATCAGGGTAACCTGAATAACTCTTTCATCAGCTCACAAGAGGCAACTTTTGGGGCAATTTCTTCACTCAGTGGAACGGATCTTCAAACTTTTGCTGCTGCAGGTCAGCTTCCCCCACAAAGTCTAGCAACACTTCAAGCAGCAGGACTGGGTAGATCAACTGCAAAAACTGGCATGCCCATGCCCCTTGTGGATCAAAGGAACCTTTTCAGTTTTGAAAACCCAAGATTAAGATTCGGAGAAGGACAACATCAATATGGGAGCAGTAGTAAACCAATGAACTTACTTCACGGTATCCCCACCAAGATGGAGCCGAAGCAGCTTGCTTCTCTGCACCAATCTACTCAACCCCTAGGGACCCTGAATATGCGAGTCAACACTTCTCCTTCCCAGAGCAACCCCTTATTAATGCAGATTTCTCAATCACAACCAAGAGGTCATATGCTTAATGAACTTAATGTGCCTCATGTTCCTAGGCTTCCAACATCTATGGGGCAGTCTTCGGTATCAAATGGGTCTCCCAGTACTGTTCTGGGAAGAAATGGTATTTCTGATAATAGCAGAGGAGCTGCATATAGCTCAGTTCCGCAAACCTCTTCGATGTTGAACTTTCCCGTGAGCCAAACCACAGAAATGCCTGCAAGTAGTTTTCCTCTTGGCAGCACTCCAGATATGTCAAGTATCACATCTAAAGGAGTCTACCAAGATGGAGGTTCTTCAGGAATGAAAGGGTCTTCTGGATTTGTTCTAAGTTATGATATCTTTAATGAACTGCACCAGCATAAGTCACGTGAATGGGAAGTACAGAACGTGGGCCAGAACCCGACATATGACGCCTCTCAGAATGCAAATCCCTTACAAGGCAACATTGATGTCTCACCATCAGTTCTAGTCCATCAAGGTTTCTCTTCCAACCAACAACAGATGGGACCGAATAGAGATGCTACTTCGGTTGGAAAAGCTATGTTCTCCCTGGGGGAAGGCATGCAGTCAGCTAATTTCCAGAATATTGGCCAACATCAGGGTTTCCAAAATCCGCTACTTACTGACAATTCAGTAAGGGTTAAGGCTGAAAGAATTCCTGATGCTAACTCTCAGACTAACCTCTTCCCTGAGAACTATGGGCAGGAGGATCTCATGAGCGCACTTCTGAAACAGCAAGAAGGCATTGGACCAGCCGAGAATGAGTTTGATTTTGATGGATATATGGACAACATCCCTGTCTAG 2055 0.4545 MNLSNGKGSMSTVSSPAVSKSGDIISDQFPAGLRVLLVDDDPTCLMILEKMLRTCLYQVTKCNRAEIALSLLRENKNGYDIVISDVHMPDMDGFKLLEHIGLEMDLPVLMMSADDGMNVVMKGVTHGACDYLIKPVRIEALKNIWQHVIRKRKNEWKDLEQSGSAEEGDQKQKPTDEVDYSSSANEGNWRNAKKRRDEDEEAEERDDSSTLKKPRVVWSVELHQQFVAAVNQLGIDKAVPKKILELMNVPGLTRENVASHLQKYRLYLRRLSGVSQHQGNLNNSFISSQEATFGAISSLSGTDLQTFAAAGQLPPQSLATLQAAGLGRSTAKTGMPMPLVDQRNLFSFENPRLRFGEGQHQYGSSSKPMNLLHGIPTKMEPKQLASLHQSTQPLGTLNMRVNTSPSQSNPLLMQISQSQPRGHMLNELNVPHVPRLPTSMGQSSVSNGSPSTVLGRNGISDNSRGAAYSSVPQTSSMLNFPVSQTTEMPASSFPLGSTPDMSSITSKGVYQDGGSSGMKGSSGFVLSYDIFNELHQHKSREWEVQNVGQNPTYDASQNANPLQGNIDVSPSVLVHQGFSSNQQQMGPNRDATSVGKAMFSLGEGMQSANFQNIGQHQGFQNPLLTDNSVRVKAERIPDANSQTNLFPENYGQEDLMSALLKQQEGIGPAENEFDFDGYMDNIPV 684
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco01g0614 684 FunFam Two-component response regulator 209 272 - -
Acco01g0614 684 SUPERFAMILY Homeodomain-like 210 270 IPR009057 -
Acco01g0614 684 Gene3D - 33 170 - -
Acco01g0614 684 SMART REC_2 33 145 IPR001789 GO:0000160
Acco01g0614 684 SUPERFAMILY CheY-like 32 156 IPR011006 -
Acco01g0614 684 MobiDBLite consensus disorder prediction 157 176 - -
Acco01g0614 684 MobiDBLite consensus disorder prediction 431 471 - -
Acco01g0614 684 PIRSF RR_ARR_type-B 7 677 IPR017053 GO:0003677|GO:0003700|GO:0009736
Acco01g0614 684 NCBIfam myb-like DNA-binding domain, SHAQKYF class 213 266 IPR006447 GO:0003677
Acco01g0614 684 CDD REC_typeB_ARR-like 35 149 - -
Acco01g0614 684 Gene3D - 210 272 - -
Acco01g0614 684 PANTHER TWO-COMPONENT RESPONSE REGULATOR 33 361 IPR045279 GO:0009736
Acco01g0614 684 MobiDBLite consensus disorder prediction 189 210 - -
Acco01g0614 684 MobiDBLite consensus disorder prediction 157 210 - -
Acco01g0614 684 FunFam Two-component response regulator 33 170 - -
Acco01g0614 684 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 212 269 IPR017930 -
Acco01g0614 684 MobiDBLite consensus disorder prediction 487 516 - -
Acco01g0614 684 ProSiteProfiles Response regulatory domain profile. 34 149 IPR001789 GO:0000160
Acco01g0614 684 Pfam Myb-like DNA-binding domain 215 265 IPR001005 -
Acco01g0614 684 Pfam Response regulator receiver domain 35 143 IPR001789 GO:0000160
Acco01g0614 684 MobiDBLite consensus disorder prediction 436 471 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco01g0614 Acco-ChrAcco01 7218664 7221852 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco01g0614 67 684 Response Regulator Gene Family AT3G16857 49.085 6.56e-173 506
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Acco01g0614 Response_reg 7.8e-22 CL0304