Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco01g0596 ATGTGTGGAGGTGCTATCATCTCCGACTTCGTCCCTCCCAAACCTGGTGGTCGGAAATCGACCACCACCAACGACTTCTGGTCGGAGATTGAAACTTTCGCTGAGCTCCTAGGATTCCATCCTTCTGCTCTTTCTCCCCATCACCAGAAGCCAGCTGTTGCTTCCCCTGATGATCAGAATCAACCTCCCATCCCAACTGCAGTGACATGTGAGAATAATAACAAAAATGAGAATACCAACATCAACAAGAAGAAGCCGGAGAAGAAAAGTGGAGGTGGAGGAAGGACTCGCAAGAACATTTACAGAGGAATCCGGCAAAGGCCGTGGGGCAAGTGGGCCGCCGAGATAAGGGACCCATACAAGGGCGTCCGAGTCTGGCTCGGCACCTTCAACACCGCAGAAGAAGCCGCCAGAGCCTATGACCAAGCCGCCAAGCGCATCCGCGGCGACAAAGCCAAGCTCAACTTCCCACCGGCTCCTCCTCCTCCGGCTCTGGCTCACCTGGAGCCGCCCCAGAAGAAGCAGTGCCTCGGCCCTGGCCAAAACGACGCCGTTCAGCTCAACGAACAAATCTCAACCCTCGAATCCTTCCTCGGTCTGGACGAGGACAACAACAAGAACAACACAACTTATGGTGTTTCGCAGCCGATCGGAGCAGCCACAGGCAATGGCAGCGTACTCTCTGAGTGGGACCCCATGGACGATCTCTGGCTCCTCAACGACGTCGTTATGCATCAACTGCATCATCATGATGGTCACTATTTCTAG 768 0.5456 MCGGAIISDFVPPKPGGRKSTTTNDFWSEIETFAELLGFHPSALSPHHQKPAVASPDDQNQPPIPTAVTCENNNKNENTNINKKKPEKKSGGGGRTRKNIYRGIRQRPWGKWAAEIRDPYKGVRVWLGTFNTAEEAARAYDQAAKRIRGDKAKLNFPPAPPPPALAHLEPPQKKQCLGPGQNDAVQLNEQISTLESFLGLDEDNNKNNTTYGVSQPIGAATGNGSVLSEWDPMDDLWLLNDVVMHQLHHHDGHYF 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco01g0596 255 Gene3D AP2/ERF domain 100 158 IPR036955 GO:0003700|GO:0006355
Acco01g0596 255 Pfam AP2 domain 101 149 IPR001471 GO:0003700|GO:0006355
Acco01g0596 255 PANTHER DNA-BINDING DOMAIN 61 174 IPR044808 GO:0003700|GO:0009873
Acco01g0596 255 FunFam Ethylene-responsive transcription factor 2 99 158 - -
Acco01g0596 255 MobiDBLite consensus disorder prediction 78 94 - -
Acco01g0596 255 SUPERFAMILY DNA-binding domain 100 157 IPR016177 GO:0003677
Acco01g0596 255 MobiDBLite consensus disorder prediction 54 77 - -
Acco01g0596 255 PRINTS Ethylene responsive element binding protein signature 101 112 IPR001471 GO:0003700|GO:0006355
Acco01g0596 255 PRINTS Ethylene responsive element binding protein signature 123 139 IPR001471 GO:0003700|GO:0006355
Acco01g0596 255 SMART rav1_2 100 163 IPR001471 GO:0003700|GO:0006355
Acco01g0596 255 MobiDBLite consensus disorder prediction 42 102 - -
Acco01g0596 255 CDD AP2 100 156 IPR001471 GO:0003700|GO:0006355
Acco01g0596 255 ProSiteProfiles AP2/ERF domain profile. 100 157 IPR001471 GO:0003700|GO:0006355
Acco01g0596 255 MobiDBLite consensus disorder prediction 1 23 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco01g0596 Acco-ChrAcco01 6943234 6945158 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco01g0596 1 243 AP2-EREBP Transcription Factor Family AT3G16770 41.463 9.49e-49 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Acco01g0596 AP2 7.7e-15 CL0081