LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Acco01g0575	ATGGCTGTCGTCCGTCAACGCCGGCAACTCAACCTTTCCCTGGCGCTGCCGGAGCCCTCCGACTGCCGCGGTCTCTTCCTTCTCTCCACCACTTCCTCCTCCATCGTCTCCTCTTCCTCCGCCGCAGACATCACCCTTAACGACATCGAAAAGCTTGAAGTTCTTGGCCACGGAAATGGTGGTACAGTCTATAAGGTTCGACACAAGCGAACTTCTGCTATCTACGCCCTGAAGGTCGTCCACAACAGCTCTGACCCGATAAGCTGCCGGCAAGTCCGGCGAGAGGTGGACATCCTCCGACGGACGGACTCGCCGTACGTAGTACAATTACACGGTTTCTTAGAGAAGCCGTCGGGCGACGTAGCGATTTTGCTAGAGTACATGGACTTGGGGACGCTGGACACACTATTAAAGAACAACGGCACCTTCTCTGAATCCCAACTCGCCACGGTGGCGCGTCAAGTTCTCAACGGGCTGAGCTACCTCCACGCGAACAAGATCATCCACCGTGATATCAAGCCGTCGAATCTTCTGGTGAATCGGGATATGGAAGTGAAGATCAGTGACTTCGGAGTGAGCAAGGTCATGTGCCGGACGTTGGACGCGTGTAATTCATACGTGGGTACGTGCGCGTACATGAGCCCGGAACGGTTCGACCCGGATAGATATGGAGGAAATTATGACGGGTATGCCGCTGATATATGGAGCTTGGGTCTCACGTTGTTCGAACTCTATGTGGGTCATTTTCCGTTTCTATCGGAGGGTCAGAGACCCGATTGGGTCACCTTGATGTGTGCCATTTGTTTTAGCGACCCGCCTACCTTGCCGGAGAGTGCTTCCGACGAGTTTCAGAGTTTCATGGAGTGTTGCTTGAAGAAGGAATCAAATGAGAGGTGGACGGCAGCTCAGCTTTTGACCCACCCGTTTCTATGTCAACAATAA	942	0.535	MAVVRQRRQLNLSLALPEPSDCRGLFLLSTTSSSIVSSSSAADITLNDIEKLEVLGHGNGGTVYKVRHKRTSAIYALKVVHNSSDPISCRQVRREVDILRRTDSPYVVQLHGFLEKPSGDVAILLEYMDLGTLDTLLKNNGTFSESQLATVARQVLNGLSYLHANKIIHRDIKPSNLLVNRDMEVKISDFGVSKVMCRTLDACNSYVGTCAYMSPERFDPDRYGGNYDGYAADIWSLGLTLFELYVGHFPFLSEGQRPDWVTLMCAICFSDPPTLPESASDEFQSFMECCLKKESNERWTAAQLLTHPFLCQQ	313

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Acco01g0575	313	SMART	serkin_6	49	310	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Acco01g0575	313	PANTHER	MITOGEN-ACTIVATED KINASE KINASE KINASE	34	312	-	-
	Acco01g0575	313	Gene3D	Phosphorylase Kinase; domain 1	28	129	-	-
	Acco01g0575	313	ProSiteProfiles	Protein kinase domain profile.	49	310	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Acco01g0575	313	Gene3D	Transferase(Phosphotransferase) domain 1	131	313	-	-
	Acco01g0575	313	FunFam	Mitogen-activated protein kinase kinase 1	29	129	-	-
	Acco01g0575	313	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	167	179	IPR008271	GO:0004672\|GO:0006468
	Acco01g0575	313	SUPERFAMILY	Protein kinase-like (PK-like)	46	311	IPR011009	-
	Acco01g0575	313	CDD	PKc_MAPKK_plant_like	47	310	-	-
	Acco01g0575	313	FunFam	Mitogen-activated protein kinase 2	130	313	-	-
	Acco01g0575	313	Pfam	Protein kinase domain	50	310	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Acco01g0575	313	ProSitePatterns	Protein kinases ATP-binding region signature.	55	78	IPR017441	GO:0005524

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Acco01g0575	Acco-ChrAcco01	6722955	6723896	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Acco01g0575	1	310	MAP Kinase Kinase Gene Family	AT1G73500	62.701	6.39e-135	383

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	STE_STE7	Acco01g0575		Pkinase	1.2e-66	CL0016