Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco01g0562 ATGGTGTTAGGATGGAGCCGAAGAAAGAACAAGAACAGAAATCTCAACCTGGAGCTTGTAACTCCAAACCATTTCATTTGTCCTGTTTCTCTTGATTTGATGAAAGATCCGGTCACGTTATCAACCGGAATCACCTACGATCGCGCGAGCATCGAACGGTGGCTTGAAGATGGGAATTTCACGTGCCCTGTAACGAATCAGATTCTCACCAGCTTCGATCTCGTTCCCAATCAATCGCTTAGGGTCTTGATTCAGGACTGGTGCGTTGAGAATCGCCGATTTGGGATCGAGAGGATTCCGACTCCTAGAATACCTGTGAGTCCATCGCAAGTCGAAGAGATTCTTCTTCATCTTCAGGCCTCGGTGTCGTGTTTCGATCGGTATGGTTTTCTGCAAGGTGTACAGAGAATCAAGGATTGGGGTTCCGAGAGCGAGAGAAACAAAAGGTGTATTGTGGATAATGGTACTTCTAGTGTATTAGCTTCTGCATTTTGTGAATTTGCGAATGATTCGATAGAGGAAAATGTGAGTGTTCTGGAGGAGATTTTGAATGCCCTTAACTGGATGCTTCCGCTTCAATTCGAAGCCCAGAAAATCTTGCAATCTTCAGATGCCTTGCGTTGCTTGGTTTGGTTCTTGAAGTATCAAGAGCTTTCTGGAAAACAGAATGCCATTGTTTCTTTGAGAGAGATCCTTTCTTCTGGTGATGAACAGACTTTAGAGACCATGGCAGAAATCGAAGGGACCATCGAGCTATTAGCGGAGTTCATTAACAAGAGAATTAACCCAACAATCACAAAAGCTTCAATGGTGATTATTTATTACTTGGTTTCATCTTCTTATCCATCAAGTGAGAAGGTGAAGCTAAAATTTATAGGTCTTGGTTTGATCTCTTCACTTCTGGAGATCCTGATTGACTCAGACAAGAGCCTATCTGGGAAGACTTTAGGTGTTTTTGATTCACTCTGTGACACTCAAAAAGGAAGAGAAAGAGCTTTCGATAATGCTCTCACAGTTCCTGTATTGGTGAAGAAGATTTTGAGGGTTTCACCTTCGGCAACAGATCACTGTGTATCTTCTATTTGGAAGTTATGCAGATATGGATCTAAAGATGAAGAAGAAGAAGAAGATGAAGATGATGAAGTAGAAGCAGCTATGATTGAAGCACTTCAAGTTGGTGCATTTCAGAAGCTGTTGGTGGTTTTGCAGGTTGGTTGTGGTGATGAAACGAAGGAGAAAGCAACAGAGCTTCTGAAATTGTTTAATCCTTATAGGGCTGGCTTGGAATGCATAGACTCAGATTTCAAGAATCTCAAGAGATCATTTTGA 1329 0.4206 MVLGWSRRKNKNRNLNLELVTPNHFICPVSLDLMKDPVTLSTGITYDRASIERWLEDGNFTCPVTNQILTSFDLVPNQSLRVLIQDWCVENRRFGIERIPTPRIPVSPSQVEEILLHLQASVSCFDRYGFLQGVQRIKDWGSESERNKRCIVDNGTSSVLASAFCEFANDSIEENVSVLEEILNALNWMLPLQFEAQKILQSSDALRCLVWFLKYQELSGKQNAIVSLREILSSGDEQTLETMAEIEGTIELLAEFINKRINPTITKASMVIIYYLVSSSYPSSEKVKLKFIGLGLISSLLEILIDSDKSLSGKTLGVFDSLCDTQKGRERAFDNALTVPVLVKKILRVSPSATDHCVSSIWKLCRYGSKDEEEEEDEDDEVEAAMIEALQVGAFQKLLVVLQVGCGDETKEKATELLKLFNPYRAGLECIDSDFKNLKRSF 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco01g0562 442 SMART Ubox_2 24 87 IPR003613 GO:0004842|GO:0016567
Acco01g0562 442 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 5 96 IPR013083 -
Acco01g0562 442 CDD RING-Ubox_PUB 22 74 IPR045210 -
Acco01g0562 442 ProSiteProfiles U-box domain profile. 20 94 IPR003613 GO:0004842|GO:0016567
Acco01g0562 442 PANTHER WDSAM1 PROTEIN 20 422 IPR045185 GO:0061630
Acco01g0562 442 FunFam RING-type E3 ubiquitin transferase 21 92 - -
Acco01g0562 442 Gene3D - 125 420 IPR011989 -
Acco01g0562 442 SUPERFAMILY RING/U-box 21 97 - -
Acco01g0562 442 SUPERFAMILY ARM repeat 173 374 IPR016024 -
Acco01g0562 442 Pfam U-box domain 22 92 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco01g0562 Acco-ChrAcco01 6648587 6649915 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco01g0562 2 442 U-box Gene Family AT5G37490 40.583 3.82e-103 312