Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco01g0559 ATGCAACATCGAAAAGCTTCAGCAGATGGGAATGTTGAGTTCTCACCGTTAGAAACCACCACGACGATGAGAAGACAGGATGAAGAATACGACGATGAAGAAGAGTGCAACGCCGCCGCCAAGAAGCAGCCACGCAACAGATTTCGATTTCGACCTCGTTTCTATTTGTGTTTCGCCGATCCCGATTCCAGGTGGCGAGCCGGCACCTCCACACACGGAGGCGGTGGCGGCGCCACCACTAATCTCCACCGCCGGTTCCTCATTCATCCAGATAACGGATGGTACTTCTTGTGGAAGCATTTCATTCTGATATGGGCAGTGTACTCTTCCTTCGTCACTCCTCTGGAGTTCGGATTCTTCAGAGGCTTGCCGGAGAAAGTCTTCTTGCTCGACATCGCCGGTCAGTTTGCTTTCCTCGTTGACATCGTCGTCCGATTCTTCGTCGCCTATCGTGACATCCATTCCTATTGCATTGTCTACAATCACACTCAGATTGCCAAAAGGTACCTGAAGTCTCGATTCATAGTTGATATTCTTAGCTGTCTTCCGTGGGATTATATTTACAAGGTTACTGGGAGGAAAGAAGCCGTCAGGTATTTTTTATGGATTAGGCTAAGTCGAGCGTGTAGAGTGACTGAGTTTTTTGAGAGGCTGGAGAAGGATATTAGGATCAATTACCTCTTCACCAGAATCGCAAAACTTCTTGTTGTAGAACTTTATTGCACCCACACAGCTGCCTGTATCTTCTACTATCTTGCTACCACTTTGCCTCCATCGGATGAAGGTTATACATGGATAGGAAGCTTAAAGATGGGTGATTATAGCTATACAGACTTTAGACATATCGATCTTTGGAAGCGTTATGTGACATCACTCTACTTTGCAATTGTGACTATGGTAACTGTTGGCTATGGGGACATCCATGCTGTTAATGTCAGGGAAATGATATTTGTCATGATTTATGTCTCCTTTGATATGATTCTTGGTGCTTACCTTCTTGGTAATATGACAGCATTGATTGTGAAAGGATCAAAAACAGAGAGGTTTAGGGATAAAATGGCTGATATTATCAAGTTCATGAATAAAAACCACTTGGACAAGCAGATAACCAAAGCGATAAAACGCCACCTACGCTTACAGTATGATCGCAGTTACACTGAGGCTGCTGTGCTTCAGGATATGCCAGCCTCTATTCGTGCAAAGATTTCAGTGAATTTGTATGAGCAATTTATACAAAAAGTTCCTCTTTTCAAGGGATGCTCTTTGGGGTTCATTAAGCAAATTGCAATCCGAGTTCATGAAGAGTTTTACCTTCCAGAAGAAGTGATTACGGAGCAAGGAAATGTAGCCAATCAACTTTACCTTGTATGCGATGGTGTGCTGGGTGAGATGAGGACAGATGATGTTGATAAAGAAGTGTTCATAAAGCATTTGCAAATCTACTGTTCCTTTGGCGAGGTCTCTTTTCTTTGTGATTTACCTCAACCTTCAACTATACGAGCGCTTGAATTTTGCAAGGTTTTGCGACTTGATAAGCATTCCTTTATGGAGACACTGAAGTTATATTTTGCAGATGGTCGGGTTATCTTGAACAATTTCCTTGAGGGAATAGACTCCGGTCTTCAGAAGAAGCTCCTGCAATCAAACTTCTCCTTAAATCTTGAAAACCTTGAAATAGAGATGGTTATGAGAATGAATTGTGCTGCATTTGAAGGGGACATTTACTTTTTGAAACGTCTGATCGAATCAGGAGCAGATCCCAACAAGACTGGTTATGATGGTAGATCACCCTTGCTTATTTCAGCATCAAAAGGACATGTAGAAATTGTTCGCTTTCTTATTGAACATGGAGTGATTATCGATTTCGCTGACAAATTTGGGAACTCCCCCTTGTTTGAAGCCATCAAGAATGGACATGAAGAAGTAGCTTCTTTACTTGTGGAGGCGGGGGCTACTCTTACCGTGGATCATGCTGGGAATTTCCTCTGCATGACTGTTGCAAAGAAGGAGTTGATCCTTCTAAGACGGGTCTTGGATTATGGTATTAATCCGAACGCCAGAAATTATGATCAACGTACACCTCTTCACATAGCTGCCTCTGAAGGTTTGTGTAAAATGGCTGAGTTGCTTCTAGAAGCAGGAGCAAGTGTTTTATCAAAGGACAGATGGGGAAATACACCGCTTGATGATGCTCATATGGGCGGAAATAGGAACATGATCAAAATGGTCGAAGTTGCAAAAATTTCTCAGTTGACTGAATTATCTCACAATATACAAGAACCTCGAGCAGAAGTGCTATTACCATCAAGAGATGAAATTCCAAGAAAGAAATGCAATGTATTTCCTTTCCATCCATGGGATCAGAAAGAGGATAGAAGAGAGGGAGTTGTCTTATGGGTTCCAAACAGCATTGAAATACTTGTTCAGTTGGCAATGAAACATCTGAACTCTTCGAGTGGTTCCCATATTTTATCAGAACACGGGTGTAAAATTCTCGATGTAGACATGATTATCAATGATGAGAAGCTATTTCTGGTTAGTGAAGAACAAGCAGAGAGTTCATAG 2565 0.4222 MQHRKASADGNVEFSPLETTTTMRRQDEEYDDEEECNAAAKKQPRNRFRFRPRFYLCFADPDSRWRAGTSTHGGGGGATTNLHRRFLIHPDNGWYFLWKHFILIWAVYSSFVTPLEFGFFRGLPEKVFLLDIAGQFAFLVDIVVRFFVAYRDIHSYCIVYNHTQIAKRYLKSRFIVDILSCLPWDYIYKVTGRKEAVRYFLWIRLSRACRVTEFFERLEKDIRINYLFTRIAKLLVVELYCTHTAACIFYYLATTLPPSDEGYTWIGSLKMGDYSYTDFRHIDLWKRYVTSLYFAIVTMVTVGYGDIHAVNVREMIFVMIYVSFDMILGAYLLGNMTALIVKGSKTERFRDKMADIIKFMNKNHLDKQITKAIKRHLRLQYDRSYTEAAVLQDMPASIRAKISVNLYEQFIQKVPLFKGCSLGFIKQIAIRVHEEFYLPEEVITEQGNVANQLYLVCDGVLGEMRTDDVDKEVFIKHLQIYCSFGEVSFLCDLPQPSTIRALEFCKVLRLDKHSFMETLKLYFADGRVILNNFLEGIDSGLQKKLLQSNFSLNLENLEIEMVMRMNCAAFEGDIYFLKRLIESGADPNKTGYDGRSPLLISASKGHVEIVRFLIEHGVIIDFADKFGNSPLFEAIKNGHEEVASLLVEAGATLTVDHAGNFLCMTVAKKELILLRRVLDYGINPNARNYDQRTPLHIAASEGLCKMAELLLEAGASVLSKDRWGNTPLDDAHMGGNRNMIKMVEVAKISQLTELSHNIQEPRAEVLLPSRDEIPRKKCNVFPFHPWDQKEDRREGVVLWVPNSIEILVQLAMKHLNSSSGSHILSEHGCKILDVDMIINDEKLFLVSEEQAESS 854
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco01g0559 854 SUPERFAMILY Ankyrin repeat 563 742 IPR036770 -
Acco01g0559 854 SUPERFAMILY cAMP-binding domain-like 344 533 IPR018490 -
Acco01g0559 854 Pfam KHA, dimerisation domain of potassium ion channel 776 845 IPR021789 -
Acco01g0559 854 Gene3D Helix hairpin bin 344 403 - -
Acco01g0559 854 SMART cnmp_10 416 534 IPR000595 -
Acco01g0559 854 ProSiteProfiles Ankyrin repeat profile. 690 722 IPR002110 GO:0005515
Acco01g0559 854 SMART ANK_2a 690 719 IPR002110 GO:0005515
Acco01g0559 854 SMART ANK_2a 657 686 IPR002110 GO:0005515
Acco01g0559 854 SMART ANK_2a 626 655 IPR002110 GO:0005515
Acco01g0559 854 SMART ANK_2a 560 589 IPR002110 GO:0005515
Acco01g0559 854 SMART ANK_2a 593 622 IPR002110 GO:0005515
Acco01g0559 854 Gene3D - 97 342 - -
Acco01g0559 854 Pfam Ankyrin repeats (3 copies) 567 655 IPR002110 GO:0005515
Acco01g0559 854 Pfam Ion transport protein 96 340 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Acco01g0559 854 Coils Coil 23 43 - -
Acco01g0559 854 ProSiteProfiles Ankyrin repeat region circular profile. 626 655 - -
Acco01g0559 854 ProSiteProfiles KHA domain profile. 777 854 IPR021789 -
Acco01g0559 854 PANTHER POTASSIUM CHANNEL AKT1 78 850 IPR045319 GO:0005249|GO:0006813
Acco01g0559 854 SUPERFAMILY Voltage-gated potassium channels 90 341 - -
Acco01g0559 854 FunFam Potassium channel SKOR 96 341 - -
Acco01g0559 854 CDD CAP_ED 416 530 IPR000595 -
Acco01g0559 854 Gene3D - 562 745 IPR036770 -
Acco01g0559 854 ProSiteProfiles Ankyrin repeat profile. 626 658 IPR002110 GO:0005515
Acco01g0559 854 Pfam Ankyrin repeats (many copies) 678 729 IPR002110 GO:0005515
Acco01g0559 854 ProSiteProfiles cAMP/cGMP binding motif profile. 416 536 IPR000595 -
Acco01g0559 854 MobiDBLite consensus disorder prediction 1 32 - -
Acco01g0559 854 PRINTS EAG/ELK/ERG potassium channel family signature 240 250 IPR003938 GO:0005249|GO:0006813|GO:0016020
Acco01g0559 854 PRINTS EAG/ELK/ERG potassium channel family signature 131 141 IPR003938 GO:0005249|GO:0006813|GO:0016020
Acco01g0559 854 PRINTS EAG/ELK/ERG potassium channel family signature 288 305 IPR003938 GO:0005249|GO:0006813|GO:0016020
Acco01g0559 854 PRINTS EAG/ELK/ERG potassium channel family signature 332 341 IPR003938 GO:0005249|GO:0006813|GO:0016020
Acco01g0559 854 PRINTS EAG/ELK/ERG potassium channel family signature 499 507 IPR003938 GO:0005249|GO:0006813|GO:0016020
Acco01g0559 854 ProSiteProfiles Ankyrin repeat profile. 593 625 IPR002110 GO:0005515
Acco01g0559 854 FunFam Potassium channel KAT2 404 540 - -
Acco01g0559 854 Gene3D Jelly Rolls 404 524 IPR014710 -
Acco01g0559 854 ProSiteProfiles Ankyrin repeat region circular profile. 593 625 - -
Acco01g0559 854 Pfam Cyclic nucleotide-binding domain 436 520 IPR000595 -
Acco01g0559 854 ProSiteProfiles Ankyrin repeat region circular profile. 690 722 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco01g0559 Acco-ChrAcco01 6608109 6621216 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco01g0559 23 722 Ion Channels AT5G37500 56.787 0.0 835