LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Acco01g0558	ATGCTGCTTGAGTTGGCGTTTGGGCGATTTGGCTTGGAAATGGCTGACACAAGCTCAGTTGGAATAATTTTGGACTTTCTGAGGAGGAATCGGTTCTCAAAAGCTGAGGCAGCTCTTCTCAGTGAACTCAATAATCGTCATGACTTAAATGGCTTCCTTGAGAAGCTTAACCTGGAAGACAAGGCCTTGCATCAGTCAGAAAAGGATAAGGGTAAACCTGTGGTAGACAATGGGGGACTGGATTCTCATGAGAATGTTGTTGTTTCTAAAGAACTGATTGTGAAAGAAATAGAGTGTGGGACTGGTGGAAATGCATCAGAAAGCAAAAGTAAAAGTACTTCTATTGGGGAATGGAAAAAATCTAATGAAGTGGTTGGGGCAGGTAACAAATACTTTGCTTTCCCCAAGAATTCAGAGGATACGATGCTTGATCTATACTCAAGGAAGTTAAATTCTGGGAATGGTCCTGTCGAGCCTTACCAAAATGGCGGTAGTGGTGCCAATAATACTTCGAAGGTCCTGGTTTCGCAGCAATCAAAACATCAAATAAGTGAAGCTCATGATATGGCCAAGAATAATGCAAAACCTGGAGAGGAAAATGCTGTGACTACTGAGAAACAGTTCTTATGGCCTGGAAGTAATGGTAGAGCCTCTGTAGAACAAAGATATGGTGGCGAGCAAACCAAAGAACCTATGGTACATGATTGCCAACTGAAATTGAAAAAATTATCTTGTGAATTGAACTTTGCAGATAATTTCTGGTCAAGAAGGGATGAGAATGAAATTTCATCTTCAGACCCACAGAATGATTGTTCTGCCAAGGCTGTTTTCCCCCTCTCCAATAGAGATACATCTACAAGATATAATGGTGCAGCTTTCTCTGAAAGAATAGAGGGAAGGACAGAAATAATTGGTACCAGGGAAGCAACGAAAATGCCGGTGGATGAAGTGGGGAGAGCTATTTATGGAGTTGATTTACAAGGCAGTTCAGAACAGAAGACTATTGGCCGCTTAAATTTTCCTGCCCCACCTGAGAATCAAAAGGAGGAGTTACCTAGGCTTCCTCCTGTTAATTTCAAGTCAGAGGACAAGCTCTTGGCTGTTAATTGGGAGGAGAAATTTGAGCAGTATAAACCTGCTTCAAAAGTTGCTGTTTTTGACAACAGTTTACTCGGAGGATCATATTTGGATGTGCCTGTTGGACAAGAAATTAACCTTTCAGGAATGAGGAGAGCTGCAGGGGGCAGCTGGCTATCTGTAAATCAAGGGATTACAGAGGATACATCTGATCTTGTATCTGGTTTTGCCACAGTTGGGGATGGGTTGGGTGAGTCTGTTGACTATTCTAATGAATACTGGGACTCTGATGAATATGACGATGATGATGATGTTGGCTACATGAGACAACCTATTGAGGATGAGGCCTGGTTTTTGGCACATGAAATTGATTATCCAAGTGACAATGAAAAGGCAACTGGGCATGGAAGTGTTCCAGATCCTCAGGACAAAGGACCAGTAAAAGATGAAGATTATGATCAATCTTTTGGTGAAGACTCTTACTTCTCTGGAGAGCAGTATGTTCAACAAAAGAATGTTGAACCAGCCATAATGTTAGATGATTCTAATGGTTTGACGATAACTGAAATGTATGGAAGCACTAAAGAGAATGGATTAATGGTTCAATATGATGGACAATTAATGAATGAAGAGCTAAATCTAATGCATGCAAAACCTGTCTGGCAGGGCTTTGTCCCTCAGACCAATGAGTTGGTCTTGCTAGAAGATGGGCAGGCTCTGAATAGCAGGGAAAGATCACAACTTGTGGATATATGTATTGATGATTATCAGCATAGTTCAGTTAGGTCAATTGGGGTAGGGATTGACAGTGATGCTGCAGACATTGGCAGTGAAGTTCGTGAAAGTTTAGTTGGTTGTAGCAGTGAAGGGAATTTAGAATATCCCTGTGATTGTGATGTAGGACATGATTGTTCCAGACACTCTCAGCATTATTTGGATAAATTGAACAAAAATAAGAGGAAAAATGGCGAGTTAAGCAAGTATGTCACTGGGGATGATAAAGGTGCATTCTTGCAGATTAACAGTCATTCTGATGGAAGTTTCTCGTATCCCCAATCACCAAAAGATGGCCAGATAATGCAGGCTGGTTCGAGTAAGCCCCTGTGGTTAAATAACAGCAATGGCGATGAACACGATGACTATCTGAATTCATTTGTGAGATCTGATGACATGCTTGCGTCTTGGAAGCAGAAAAGCAGTGATTCTATACCCATGAAAAGTTTAAGGGAAGAGAATAATGCTAATGAAGTAAGATCCACTAACACTTCTCCAACAGCAGTCTCAAATTATGGATATACTGAAAAAGCACTGGTCAGTCTAGAAGAAGATGAACAAGCTGACATTGCAGGGGAAGAAGATTTTGGGATATTGCTTGATGATGAAGATGCTGCCGCTGTTCAGGATCAATTAAGGCAAATAAAGGCCCAGGAAGAGGAGTTTGAAACCTTCAATTTAAAGATTGTGCATAGGAAAAACAGAACTGGCTTTGAGGAGGACAAGAATTTCCATGTCGTTTTAAATTCTGTAATAGCTGGGCGCTATCATGTAACTGAATATCTGGGATCTGCTGCATTCAGTAAAGCCATACAAGCTCATGATTTGCATACAGGCATGGATGTTTGTGTTAAAATAATAAAGAACAACAAGGACTTCTTTGACCAAAGCCTCGATGAGATTAAGCTTCTCAAGTATGTCAATAAACATGATCCTGCAGACAAGTATCACATTCTTCGATTGTATGATTATTTCTATTATCGAGAACATCTGTTAATTGTAAGCGAACTACTTAAAGCCAACTTATATGAGTTTCATAAATTTAATCGAGAATCAGGGGGTGAAGTATACTTCACAATGCCAAGATTGCAGTCAATTACAATTCAGTGTTTGGAAGCGCTGCAGTTTTTGCACAGCCTTGGACTTATACATTGTGACCTGAAGCCAGAGAATGTTTTGGTGAAAAGCTATAGTAGATGTGAGGTGAAGGTCATTGATCTTGGGAGTAGTTGTTTTGAGACAGATCAGCTTTGCTCATACGTCCAGTCCAGGTCCTATCGTGCTCCTGAGGTTATATTGGGACTTCCATATGACAAGAAGATTGATATATGGTCACTTGGCTGCATTTTGGCAGAACTTTGTACTGGCAACGTCCTCTTTCAAAATGATTCATCTGCAACATTACTTGCTCGGGTGATTGGCATCATCAGTCCAATTGATCAAAATATGCTTACAAAAGGAAGTGATACATATAAGTATTTCACCAAAAATCATATGCTTTATGAACGGAATCAGGAAACCAATAGGTTAGAATACTTGATTCCCAAGAAGACATCTTTGAGGCATAGATTGCCAATGGCAGACCAAGGGTTCCTTGACTTTGTTGCTTATTTGCTTGAGGTTAACCCAAAGAAGCGGCCTTCTGCTACTGAGGCCCTCAACCATCCATGGTTATCATACCCTTATGAACCCATATCATCTTGA	3555	0.4056	MLLELAFGRFGLEMADTSSVGIILDFLRRNRFSKAEAALLSELNNRHDLNGFLEKLNLEDKALHQSEKDKGKPVVDNGGLDSHENVVVSKELIVKEIECGTGGNASESKSKSTSIGEWKKSNEVVGAGNKYFAFPKNSEDTMLDLYSRKLNSGNGPVEPYQNGGSGANNTSKVLVSQQSKHQISEAHDMAKNNAKPGEENAVTTEKQFLWPGSNGRASVEQRYGGEQTKEPMVHDCQLKLKKLSCELNFADNFWSRRDENEISSSDPQNDCSAKAVFPLSNRDTSTRYNGAAFSERIEGRTEIIGTREATKMPVDEVGRAIYGVDLQGSSEQKTIGRLNFPAPPENQKEELPRLPPVNFKSEDKLLAVNWEEKFEQYKPASKVAVFDNSLLGGSYLDVPVGQEINLSGMRRAAGGSWLSVNQGITEDTSDLVSGFATVGDGLGESVDYSNEYWDSDEYDDDDDVGYMRQPIEDEAWFLAHEIDYPSDNEKATGHGSVPDPQDKGPVKDEDYDQSFGEDSYFSGEQYVQQKNVEPAIMLDDSNGLTITEMYGSTKENGLMVQYDGQLMNEELNLMHAKPVWQGFVPQTNELVLLEDGQALNSRERSQLVDICIDDYQHSSVRSIGVGIDSDAADIGSEVRESLVGCSSEGNLEYPCDCDVGHDCSRHSQHYLDKLNKNKRKNGELSKYVTGDDKGAFLQINSHSDGSFSYPQSPKDGQIMQAGSSKPLWLNNSNGDEHDDYLNSFVRSDDMLASWKQKSSDSIPMKSLREENNANEVRSTNTSPTAVSNYGYTEKALVSLEEDEQADIAGEEDFGILLDDEDAAAVQDQLRQIKAQEEEFETFNLKIVHRKNRTGFEEDKNFHVVLNSVIAGRYHVTEYLGSAAFSKAIQAHDLHTGMDVCVKIIKNNKDFFDQSLDEIKLLKYVNKHDPADKYHILRLYDYFYYREHLLIVSELLKANLYEFHKFNRESGGEVYFTMPRLQSITIQCLEALQFLHSLGLIHCDLKPENVLVKSYSRCEVKVIDLGSSCFETDQLCSYVQSRSYRAPEVILGLPYDKKIDIWSLGCILAELCTGNVLFQNDSSATLLARVIGIISPIDQNMLTKGSDTYKYFTKNHMLYERNQETNRLEYLIPKKTSLRHRLPMADQGFLDFVAYLLEVNPKKRPSATEALNHPWLSYPYEPISS	1184

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Acco01g0558	1184	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	999	1011	IPR008271	GO:0004672\|GO:0006468
	Acco01g0558	1184	Pfam	Protein kinase domain	873	1175	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Acco01g0558	1184	PANTHER	DUAL SPECIFICITY PROTEIN KINASE	417	1175	-	-
	Acco01g0558	1184	CDD	PKc_DYRK_like	873	1175	-	-
	Acco01g0558	1184	FunFam	Putative serine/threonine-protein kinase dyrk2	867	954	-	-
	Acco01g0558	1184	FunFam	Serine/threonine-protein kinase ppk15	952	1176	-	-
	Acco01g0558	1184	Coils	Coil	825	845	-	-
	Acco01g0558	1184	ProSiteProfiles	Protein kinase domain profile.	873	1175	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Acco01g0558	1184	Gene3D	Phosphorylase Kinase; domain 1	867	954	-	-
	Acco01g0558	1184	SMART	serkin_6	873	1175	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Acco01g0558	1184	Gene3D	Transferase(Phosphotransferase) domain 1	927	1175	-	-
	Acco01g0558	1184	MobiDBLite	consensus disorder prediction	487	511	-	-
	Acco01g0558	1184	SUPERFAMILY	Protein kinase-like (PK-like)	862	1177	IPR011009	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Acco01g0558	Acco-ChrAcco01	6590186	6599503	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Acco01g0558	871	1170	MAP Kinase Gene Family	AT5G19010	30.000	5.18e-29	122

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_DYRK-PRP4	Acco01g0558		Pkinase	1.1e-51	CL0016