Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco01g0550 ATGTTAGCCAATAACTCTCTCACCTCCGAGCCCTTTCCCTGCGCCGATAATGGCGCTATTACGACCAACAAGAGAAAGAGAAGGCCCGCAGGAACACCAGATCCGGACGCGGAGGTGGTGTCGCTGTCGCCGAAGACGTTACTGGAATCGGACCGGTACGTCTGCGAGATCTGCAATCAGGGGTTTCAGAGGGACCAGAACTTGCAGATGCACCGCCGGAGGCACAAGGTGCCGTGGAAGCTCCTCAAGAGGGAGACGCCGGCGGTGAGGAAGCGGGTGTTCGTTTGCCCCGAGCCCACATGCCTGCACCACGACCCCTGCCACGCGCTCGGCGATCTTGTAGGAATCAAGAAACACTTCCGACGAAAACACAGCAACCACAAACAATGGGTCTGTCAACGTTGCTCTAAAGGCTACGCCGTTCAGTCTGATTATAAAGCTCATCTCAAAACCTGTGGTACCAGAGGCCACTCTTGCGATTGTGGTCGCGTTTTCTCCAGGGTGGAGAGCTTTATCGAACACCAAGATGCTTGTAACATGGGGCGGCTTCGGTCAGAAACACGGCCGCTTCAACAGCAGCAGCCACCGCCGGCGTGCCTGTCACGAACCACTTCGAGCCCGAGTCCGTCGAGCGAAACCAATTTCAGTACCGGTCTAGTGTTGCCTGGTAATAAGCCGACAACGACGTCTGAACCGTCGGCAATATTATTGTTGAGCCCCACCATTAATAATGATAATAATACTCGTGTTGCTCATGAAACCTCATCGGGCAACAAGTATAATAAACTGTGTCCAAACTTGGATCTTCGTCTCTCTACCACCACCTCTACTTCCATGATTCCCTTTATTGATACTAATGCTTCACAACCAAATAAGAGAGATCATGAAAGCCGTTCGAACCACTTCAGGATTTTGATCGGGTCGTCGTCTTCTGAGATGGGCCAAAAAAATGAATCCAACGGCTGCTTCAATATTATTAATAATCGCAGGAATAATTCACCCAAGGAAAGCTGTAACAGCAGCCATAAACCAGAAGGTACTAATGGAGCGCTGAGGGGGGTTCATGAAGAAGGAGAACAAGAAGATCGAGAGCAATTGAGGTTAGCCATGGCGGATAAGGCATATGCAGATGAAGCAAGGAAGCAGGCAAAACGACTGATAGAAGTTGCAGAGAAGGAGTTTGCTAATGCAAAGAGCATAAGACAAGAAGCTCAAGCTGAGCTTGAAAAAGCCTACGCCATTAAACAACATGCCATCAAACAGGTCAACTCTCTCATGCTTCAAATTACTTGTCATGCTTGTAAACGGCAATTTTCAGCCCAAACGACACCCACCACCACAATCATCACCCCATTGGTGGTTCCTCCGCCGCCGTCGGACGAGAACTCCTTGGCAGTTAGCTACATGTCGTCTGCTCTAACAACTGAAGCAGGCGAGGAAGAGAACTATAATAATAATAATAATAGTAATGAGAAAAATCAGGGCAAAAATAGTAACTCTTTATCATCTCTCTAG 1515 0.4898 MLANNSLTSEPFPCADNGAITTNKRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRETPAVRKRVFVCPEPTCLHHDPCHALGDLVGIKKHFRRKHSNHKQWVCQRCSKGYAVQSDYKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDACNMGRLRSETRPLQQQQPPPACLSRTTSSPSPSSETNFSTGLVLPGNKPTTTSEPSAILLLSPTINNDNNTRVAHETSSGNKYNKLCPNLDLRLSTTTSTSMIPFIDTNASQPNKRDHESRSNHFRILIGSSSSEMGQKNESNGCFNIINNRRNNSPKESCNSSHKPEGTNGALRGVHEEGEQEDREQLRLAMADKAYADEARKQAKRLIEVAEKEFANAKSIRQEAQAELEKAYAIKQHAIKQVNSLMLQITCHACKRQFSAQTTPTTTIITPLVVPPPPSDENSLAVSYMSSALTTEAGEEENYNNNNNSNEKNQGKNSNSLSSL 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco01g0550 504 ProSitePatterns Zinc finger C2H2 type domain signature. 55 75 IPR013087 -
Acco01g0550 504 SMART c2h2final6 130 157 IPR013087 -
Acco01g0550 504 SMART c2h2final6 53 75 IPR013087 -
Acco01g0550 504 SMART c2h2final6 94 124 IPR013087 -
Acco01g0550 504 MobiDBLite consensus disorder prediction 13 39 - -
Acco01g0550 504 MobiDBLite consensus disorder prediction 469 504 - -
Acco01g0550 504 Coils Coil 380 421 - -
Acco01g0550 504 ProSiteProfiles Zinc finger C2H2 type domain profile. 53 75 IPR013087 -
Acco01g0550 504 SUPERFAMILY beta-beta-alpha zinc fingers 50 76 IPR036236 -
Acco01g0550 504 MobiDBLite consensus disorder prediction 333 362 - -
Acco01g0550 504 MobiDBLite consensus disorder prediction 309 328 - -
Acco01g0550 504 MobiDBLite consensus disorder prediction 186 228 - -
Acco01g0550 504 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 19 484 IPR031140 -
Acco01g0550 504 Gene3D Classic Zinc Finger 41 126 - -
Acco01g0550 504 FunFam protein indeterminate-domain 12-like 32 100 - -
Acco01g0550 504 Pfam Zinc finger, C2H2 type 53 75 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco01g0550 Acco-ChrAcco01 6517637 6520759 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco01g0550 366 482 C2H2 Transcription Factor Family AT2G01940 50.427 1.79e-27 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Acco01g0550 zf-C2H2 0.0049 CL0361