LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Acco01g0547	ATGATATTTCAGAGCCTTCCTCGGATCATTCCTTCGAGTACAAAAACAAAAACAGTTTGCTTTGGAGCCCGAGCATTTGCCTTCTGCTTTCTTCGTTCTCCCTCCGTAGACGGCAAGAACCCTAACTACAGAGTGAACTCAGATCACAACCTACAAGTTGAAATCTTCGTTGAAAAAGATGTGCTTGGGGAACCCAATTCATTTCTTGTTATAATGGATGGTGATAATGGCCTTGACATGCGAAATTGGGGTTACTATGAACCCACAACTTCCTTTAAGAATCATCTTGGACTCCAGCTTATGTCGTCCATGCCTGAAAAACCCATGCTTGGAGGGCGCAGTGTTCCGGTTTTGTCCGGAAACAACAATGTGGCATTTCACCATCGGACTATTGGGATGCCACAAGCAACTTACCCTATGGATTACATGAGGGAAGCTTGGATTAGTCAAAGGGAGAAGTTTTTGAGCATGATTCCAACAAACCCAACAAACTATGCTGTTATTCCAGAGACATCTTCGGCTCATCACATGCAGTTGGTTCAACCGCCTGACTTGGTGAAGGAAGAAAGACCGGTGGAAGAGGTGCCTGCTGAGAAGATTAATGGCACTAGTAAGAAAAGGCAGGGTCCCAAGTTACCCAAATCTCCCAAGGCAAAGAAGCCCAAGAGAGGACCTCGGGCACCAAAGGATGAGAATACTCTTTCAGTTCAACGAGCAAGGCCTCCGAAGAAAACTACTGAAATTATAATAAATGGGATTGACTTGGATATCTCGAGCATTCCTATTCCAGTTTGTTCGTGCACTGGGTCGCCTCAGCAGTGTTACAGATGGGGTTCTGGTGGGTGGCAATCTGCTTGCTGCACGACAAATATGTCAGTTTATCCGTTGCCTATGAGTACAAAGCGGCGTGGTGCTAGGATAGCTGGGAGAAAAATGAGTATTGGAGCATTTAAGAAAGTCTTAGAGAAACTCGCAGCTGAGGGTTATAACTTCTCTAATCCAATTGATTTGAGGACTTATTGGGCAAAACATGGCACTAACAAGTTTGTCACTATCAGGTAG	1062	0.4482	MIFQSLPRIIPSSTKTKTVCFGARAFAFCFLRSPSVDGKNPNYRVNSDHNLQVEIFVEKDVLGEPNSFLVIMDGDNGLDMRNWGYYEPTTSFKNHLGLQLMSSMPEKPMLGGRSVPVLSGNNNVAFHHRTIGMPQATYPMDYMREAWISQREKFLSMIPTNPTNYAVIPETSSAHHMQLVQPPDLVKEERPVEEVPAEKINGTSKKRQGPKLPKSPKAKKPKRGPRAPKDENTLSVQRARPPKKTTEIIINGIDLDISSIPIPVCSCTGSPQQCYRWGSGGWQSACCTTNMSVYPLPMSTKRRGARIAGRKMSIGAFKKVLEKLAAEGYNFSNPIDLRTYWAKHGTNKFVTIR	353

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Acco01g0547	353	PANTHER	-	72	353	IPR010409	-
	Acco01g0547	353	MobiDBLite	consensus disorder prediction	181	241	-	-
	Acco01g0547	353	SMART	GAGA_bind_2	72	353	IPR010409	-
	Acco01g0547	353	Pfam	GAGA binding protein-like family	72	353	IPR010409	-
	Acco01g0547	353	MobiDBLite	consensus disorder prediction	182	205	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Acco01g0547	Acco-ChrAcco01	6480066	6481642	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Acco01g0547	72	353	BBR or BPC Transcription factor family	AT2G01930	50.505	2.04e-92	276

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	BBR-BPC	Acco01g0547		GAGA_bind	1.3e-108	No_clan