Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco01g0540 ATGCAGGACCAAATAGAAGGAACAAAGTTCAATAACTCTGGCAATGCTAGTAATAACCTTTCCAACAATGGCACAAAATCTGAAATTGTTGCCCTGTTGAAGGGTCAAACTCCTAATGTAAACAATCATACTCCTAAGGTGAGGAAACCATATACCATTTCCAAGCAAAGAGAAAAGTGGACAGAGGAAGAGCATCAGAAGTTCCTAGAGGCTTTGAAATTGTATGGTCGTGGTTGGCGGCAAATTGAAGAACACATAGGTACAAAGACTGCAGTTCAGATTCGAAGTCATGCTCAGAAGTTCTTTTCTAAGGTCGCCCGGGAATCTGATGGCACTGCTGACAGTTCTATAAAACCAAGTGATATACCTCCTCCTCGGCCAAAGAGGAAACCTCTACATCCATATCCCCGTAAATCAGTTGACTCTGGCAAAAGACCATCCATAGCAAATGAAGTGGAAAGATCTCCATCCCCAAACCTGGCAGTTGCAGAGAGAAACACCCAATCCCCGACCTCTGTGCTATCTGCATTCAATTCAGAAGTATTTGGGTCAGCATCTTCAGAGCAGCCTAATAGATGTGAATCACCTCATTCTTGTGCCACTGACGTTCACTCATCCAACTTATCGCTATCACCCTTTGAAAAGGAAAATGATTGCATGACATTTGACTCCTCTGTGGAGGAAGAGAAAGGGTCTCTTACATCACTCTCTTTATCTGCTAGTTTCAACTTACATGTGTTTTCAACGAAGTCTCAGTTGAGTTCCAAGGATACTGAATCCTCAATTGAAGTTGCTACAAACATGGCCTACGTTACAAGTATTAAATTGTTTGGAAGAACTATTCAGATGGTAGATAACCAGAAGCCACTTGATGTAGATGGGAGAATAACAATGCAATTGCAAGCAAGTAGATGA 915 0.4186 MQDQIEGTKFNNSGNASNNLSNNGTKSEIVALLKGQTPNVNNHTPKVRKPYTISKQREKWTEEEHQKFLEALKLYGRGWRQIEEHIGTKTAVQIRSHAQKFFSKVARESDGTADSSIKPSDIPPPRPKRKPLHPYPRKSVDSGKRPSIANEVERSPSPNLAVAERNTQSPTSVLSAFNSEVFGSASSEQPNRCESPHSCATDVHSSNLSLSPFEKENDCMTFDSSVEEEKGSLTSLSLSASFNLHVFSTKSQLSSKDTESSIEVATNMAYVTSIKLFGRTIQMVDNQKPLDVDGRITMQLQASR 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco01g0540 304 MobiDBLite consensus disorder prediction 123 140 - -
Acco01g0540 304 Gene3D - 59 106 - -
Acco01g0540 304 Pfam Myb-like DNA-binding domain 57 100 IPR001005 -
Acco01g0540 304 SMART sant 56 104 IPR001005 -
Acco01g0540 304 MobiDBLite consensus disorder prediction 105 169 - -
Acco01g0540 304 NCBIfam myb-like DNA-binding domain, SHAQKYF class 55 104 IPR006447 GO:0003677
Acco01g0540 304 CDD SANT 59 102 IPR001005 -
Acco01g0540 304 PANTHER SWI/SNF COMPLEX-RELATED 16 263 - -
Acco01g0540 304 SUPERFAMILY Homeodomain-like 51 106 IPR009057 -
Acco01g0540 304 FunFam protein REVEILLE 6 isoform X1 59 107 - -
Acco01g0540 304 ProSiteProfiles Myb-like domain profile. 52 102 IPR001005 -
Acco01g0540 304 MobiDBLite consensus disorder prediction 1 23 - -
Acco01g0540 304 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 52 106 IPR017930 -
Acco01g0540 304 ProSiteProfiles SANT domain profile. 55 106 IPR017884 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco01g0540 Acco-ChrAcco01 6409306 6413277 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Acco01g0540 Myb_DNA-binding 8.6e-14 CL0123