Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco01g0514 ATGTCTTCTGCCGGCGGTGACGGCGGCGGGTTTACCTCCAGCGCTTCTTCTCAATTATATTTTTGCCACCAGTGCGACACCACCGTATCCATTACGACTTCATCTTCCGCTGATCTCACTTGTCCCAATTGCAACGGCGGCTTCATTGAAGAAGTCGATAATCCCAGCCCTAATGTTACCAATCCCTCCTTTTCTTTTTCCTCTGAGGTTGGCGGCGGCGGCAGTGCCGGTTTTCCTATAGTATTCTCTACCACTTCAACCGGCGGCGGCAGTGGTGCTGGTGGGCCGACATTCGACGATCTTTCCACTCTTTTTGGCGGTGGACCTAATCGATCGTCTCCGTTCGGAGAAAATGATGCGTTCAACCCCTTGGCGTTTCTTCAGAACTATGTTCAAACCCTGAGAGCCGGCGGTGCTAATGTTCAATTTGTGATAGAGAACTCTGGAGACCCTAGTGGAACCTTCCGTCTGCCCGCGAATCTCAATTTTGGTGATTATTTTTTTGGACCTGGCCTCGAGCAATTGATTCAACAGCTCGCAGAGAACGATCCTAACCGACATGGGACGCCCCCAGCCTCGAAATCTGCCATTGAGGGCCTCCCTACTATTAAGATTTCAGAAGATTTGCTGAATTCGGATTCATCGCAGTGTGCCGTTTGTAAAGATACATTTGAGCTCGCGGAAGAGGTGAAGCAGATGCCATGCAAACATATCTATCATTCAGATTGCATTTTGCCTTGGTTGGAATTGCATAATTCTTGCCCTGTTTGCCGGTTCGAGTTGCCAACGGATGATCCTGACTACGAGCAACGTCGTGGGGCTTCTACCCAGGTGAATCGAAATCAATCTGCAAGGGAAGGTGAGACCTCTGGTTCTTCTGAAGGCGGTAATGGCAGCGGCAGCGGTAGTGAAGCATCTGGCCAAGACTCACCGAGAGAACGCAGGTTTCGGGTTTCTTTGCCTTGGCCTTTTAGGCAATTAGCTTCCATAGCCGAGACGAGCAGTACTGGGAACGCCAACGTCAGCGGAAATAATAGTGGGGAATCAAATTCTGGAAGAAGTGGAAACCAGAATTTTGAGTCGGAGACCAGACAAGAAGATCTCGATTAA 1110 0.4982 MSSAGGDGGGFTSSASSQLYFCHQCDTTVSITTSSSADLTCPNCNGGFIEEVDNPSPNVTNPSFSFSSEVGGGGSAGFPIVFSTTSTGGGSGAGGPTFDDLSTLFGGGPNRSSPFGENDAFNPLAFLQNYVQTLRAGGANVQFVIENSGDPSGTFRLPANLNFGDYFFGPGLEQLIQQLAENDPNRHGTPPASKSAIEGLPTIKISEDLLNSDSSQCAVCKDTFELAEEVKQMPCKHIYHSDCILPWLELHNSCPVCRFELPTDDPDYEQRRGASTQVNRNQSAREGETSGSSEGGNGSGSGSEASGQDSPRERRFRVSLPWPFRQLASIAETSSTGNANVSGNNSGESNSGRSGNQNFESETRQEDLD 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco01g0514 369 MobiDBLite consensus disorder prediction 268 369 - -
Acco01g0514 369 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 112 262 - -
Acco01g0514 369 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 178 264 IPR013083 -
Acco01g0514 369 MobiDBLite consensus disorder prediction 272 307 - -
Acco01g0514 369 SUPERFAMILY RING/U-box 197 265 - -
Acco01g0514 369 FunFam E3 ubiquitin-protein ligase RING1-like 178 264 - -
Acco01g0514 369 SMART ring_2 217 257 IPR001841 -
Acco01g0514 369 Pfam zinc-ribbon 18 51 IPR039525 GO:0061630
Acco01g0514 369 MobiDBLite consensus disorder prediction 328 359 - -
Acco01g0514 369 Pfam Ring finger domain 216 258 IPR001841 -
Acco01g0514 369 CDD RING-H2_RNF126-like 216 258 - -
Acco01g0514 369 ProSiteProfiles Zinc finger RING-type profile. 217 258 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco01g0514 Acco-ChrAcco01 6189879 6190988 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco01g0514 158 270 C3H Transcription Factor Family AT5G01980 49.558 5.97e-35 132