LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Acco01g0473	ATGATGTCCGGTTCGTTAGAATATTGGAGGAATTACTTTCGAACTGCAAATACTGATATATTTGATATAATTGACCACGCAATTATGGTGGCGGCTTCCGATTGTCCGAACGAATTTAGATTACGAAGGAACCAGATTTCGGAACATTTGTTTTCTCGGAGATTGACTCATTGTGTGCAGTGTGATCGATTAAGGTCAGGGGTTTCCAGTGATGATAAGGAAGATGGAGGTTGTAAGTGTAGTTTTGGTCGAAAAGCTACTGAATTAGGAGGCTATACTAGAGAGAGAAAGGGCAATAGTGGTAGAGACGATCTTAGAGGGATGAAAAGGAGCCAAGTTAGTAATTCTCGTTTTGGAGAAGCTGAGGGATTGACGGGTGAGACTGAAAAAGAGCCTAAGATAGTTGCAGAGATTTTGAGGATCAAAGAGATTCTCTGTAAGGAAGAAGATGATTCAATGTTGTTTGAGTCACTAAGGAGGTTACAGCCGCTGGCACTTACCGTGAACCTTCTTAAGGAAACTGAGATTGGAAAGGCTGTCAACCCTCTCAAGAAGCATGGCTCGAAGGAGATCCGTCAACTTGCACGAACTCTTATCAATGGTTGGAAAGCAATGGTAGATGAATGGATCAACTCGACAGAAGCTATAGAAGTGAAAGGCATCCTAGATTCAATTAATCTATCCGTCCTTAATGAAGGGGAAAGGCTTCATTCTCCTCTAGACGAAGTTGCAATGAGATATAGTAAACTGGTTTGCACTGATTCTAGCTCTGGCAGGCAACCAAAATCCAGCTTGCCGCAAAAAAGCAACACAGGACCAAAGGTGCAGCAGAAAAAGGAGATTTTTAAGATCAAAAAGAGGCCTCTTGTTGCTCGGCAAGATTGTCAGAAATTCAAGTGTTCAGATGATGTTTCAGTCCAAGCAAAACTAGAAGCCACTAAGAGGAAACTCCACAACTCTTATCAACAAGTTGCAAATGCCAAGAAGCAGCGAACCATACGGATTATAGAGTTGCATGATCTTCCAAAACAAGGGAACATTGACCCCCGAAATCCACACTCTAAGCTTTGGCATGTTCTAGGACGAAGAAGATAG	1095	0.4219	MMSGSLEYWRNYFRTANTDIFDIIDHAIMVAASDCPNEFRLRRNQISEHLFSRRLTHCVQCDRLRSGVSSDDKEDGGCKCSFGRKATELGGYTRERKGNSGRDDLRGMKRSQVSNSRFGEAEGLTGETEKEPKIVAEILRIKEILCKEEDDSMLFESLRRLQPLALTVNLLKETEIGKAVNPLKKHGSKEIRQLARTLINGWKAMVDEWINSTEAIEVKGILDSINLSVLNEGERLHSPLDEVAMRYSKLVCTDSSSGRQPKSSLPQKSNTGPKVQQKKEIFKIKKRPLVARQDCQKFKCSDDVSVQAKLEATKRKLHNSYQQVANAKKQRTIRIIELHDLPKQGNIDPRNPHSKLWHVLGRRR	364

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Acco01g0473	364	SUPERFAMILY	Conserved domain common to transcription factors TFIIS, elongin A, CRSP70	135	215	IPR035441	-
	Acco01g0473	364	Coils	Coil	310	330	-	-
	Acco01g0473	364	MobiDBLite	consensus disorder prediction	253	276	-	-
	Acco01g0473	364	Gene3D	Conserved domain common to transcription factors TFIIS, elongin A, CRSP70	126	218	IPR035441	-
	Acco01g0473	364	SMART	TFS2_5	135	208	IPR003617	GO:0005634
	Acco01g0473	364	MobiDBLite	consensus disorder prediction	91	126	-	-
	Acco01g0473	364	MobiDBLite	consensus disorder prediction	91	110	-	-
	Acco01g0473	364	Pfam	TFIIS helical bundle-like domain	158	206	IPR017923	-
	Acco01g0473	364	ProSiteProfiles	TFIIS N-terminal domain profile.	136	209	IPR017923	-
	Acco01g0473	364	MobiDBLite	consensus disorder prediction	253	278	-	-
	Acco01g0473	364	CDD	TFIIS_I	136	207	-	-
	Acco01g0473	364	PANTHER	MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26A-RELATED	253	353	IPR044805	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Acco01g0473	Acco-ChrAcco01	5841660	5843884	Proximal

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	IWS1	Acco01g0473		Med26	5.1e-13	No_clan