Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco01g0423 ATGGTCCTGATTGGAGGGAAGCCATTGAAGCGGATGAAGACGAGAGTGACGGCTGATTTCTACGACTTCCTCACTTTTCCGCCACCGTCACTCGTCGTGGCAGATGAGATCTCCGGCGGACCCTTCCGGACAAACGTGCGCTCGTTCCTTTCGAAGCACGCGCTGCTCCCACCGCCATCCGCACTGTTTCCTCACTTGCTGACGTGGCAGATCCTTTTCCGAGTTGGTGACCAGACGGATGGTCCGGACTCGACGCCGTCAGTGGTCTGCCTCGACGTCGTGGAAGAGGATGTGGCCAGATCCAGATCAGTCTACTGCGATCAGTGTCGAGTTGTTGGTTGGAGTGATCACCCAGTATGCAGGAAACGTTACCACTTTATAGTCAAGGCTGATGGAAGCTCCATTGGTGGATACCACAAGCCATGCATGTGCTGTGGAGATATCTTGCATTTGTCAGAATCCAAGTGTAGGTCATGCAGCCATGTGACGACCACTGATGATGTTGAAGACTGGGTATATCACCAGTTAGAAAACACGAGCCATCTTTTACATGGTGTTGTCCATGCAAATGGCTATGGGCACCTTCTTCGGGTTAATGGCAGGGAAGGGGGCTCGAGAGTTCTTTCTGGTTTGCATATCATGAACTTCTGGGATCGTCTCTGCAAGTCACTTGGAGCCAGAGAAATTAGTGTAATGGATGTTTCAATGAAATATGGGCTGGAGTACCGCCTGATACATGCTATTACAAAGGGGCATCCCTGGTATGGTGATTGGGGCTACCAATTTGGCACTGGTAGCTATGGTCTCACGCATGAAGCATATAAGTCTGCAGTTGAATTCCTTTCCAGTCTACCATTGTCCCAATTTCTCTCTGAAGGAAAGAGACCTGATTCTCGATTGCGGGACACAATCTCATATTACCAGTCTTTGTCTGAAACTGGGCTTGTAAATATAAGGGATCTCTTTTGTTTTTTGATTGGTTTGATTCACGATACTCGCATGACAGTGACAAGGGCTGATGATGTCACTTGCAAGAAGCGCTTTTCTAATGCTGCTGGAGTGTCATGTTTCTCATCAATGAGTGACATTGAACGTGTGGAGGGAGCAATGCTCAGAGTGTTGCGTGCAGTGTCAGGATCCAATTGGGTGAGCCGGCGTACTCTTAAGGGTGCTGTCTGCAAAGTGGCCTCTCCAGAGCTTCTTGACTACTGTCTCGGAGAACTAGGAGGGAAAGCAACATTTGGTGGTATGGTTGTCAATACCCGATGCAATCCTGTCACTGGAGCTTCAGAGTACAGACTAGAGGCAGGGAACAGCGTTTCCTATGGAACGACAGCAAGCAATAATAAATCTATGCGTTTGAAGTGTCCATCTGAAGTGAATCTCCTGCACGACTTGAGATATTTATTTGAGTCTTTGCTTCATCCTCATAAGATGCTAAGCTATGACTCTGAGGAGACAAGGACTGCAGCAATGAGCTATTCACAGAAACTTCTTGATTGCAAGCATTTTGTAAAAGATTATAGACCTGGGATGGTGCCAATGACAAGCTTGAATAGGATACGCCTCTCGTGTCAGGTAGTACTAGTAGTTGATGAAACTGATGAAGCTTTTGCAAATCCTCCACCAGAATTAATAGTCCTGCCCTTGAATGCCACTGTGTCCGACCTCAAGACTGAAGCATCAAATGCTTTTCAAGATGTGTATCTCATGTATAAAAGATTTCAAGTTGATGAGCTCTTCGGCTGTAGCAGCGCAGATGATTCCACTCCGGTCAAACTCTTGATAGGATCAACAGAATTGGTTCGTGTCCGAGGAAAATGCATCGGGAAGAATGTATTGAGCAGGTTCCAAAGGGAACGTGGACTCGAGAGGTGGACCGTCGATTGCAGCTGCGGGGCCAAAGATGATGATGGGGAGAGAATGTTGGCATGTGATGCGTGTGGGGTGTGGAGGCACACTAGGTGTTCTGGTATTCTTCATGCAGATCCTGTCCCTGTGAGGTTCTTGTGCCCCAGATGCCAAAATTTTGAGTTGAGGCCGTATTCAAGTGGACACTGA 2061 0.4779 MVLIGGKPLKRMKTRVTADFYDFLTFPPPSLVVADEISGGPFRTNVRSFLSKHALLPPPSALFPHLLTWQILFRVGDQTDGPDSTPSVVCLDVVEEDVARSRSVYCDQCRVVGWSDHPVCRKRYHFIVKADGSSIGGYHKPCMCCGDILHLSESKCRSCSHVTTTDDVEDWVYHQLENTSHLLHGVVHANGYGHLLRVNGREGGSRVLSGLHIMNFWDRLCKSLGAREISVMDVSMKYGLEYRLIHAITKGHPWYGDWGYQFGTGSYGLTHEAYKSAVEFLSSLPLSQFLSEGKRPDSRLRDTISYYQSLSETGLVNIRDLFCFLIGLIHDTRMTVTRADDVTCKKRFSNAAGVSCFSSMSDIERVEGAMLRVLRAVSGSNWVSRRTLKGAVCKVASPELLDYCLGELGGKATFGGMVVNTRCNPVTGASEYRLEAGNSVSYGTTASNNKSMRLKCPSEVNLLHDLRYLFESLLHPHKMLSYDSEETRTAAMSYSQKLLDCKHFVKDYRPGMVPMTSLNRIRLSCQVVLVVDETDEAFANPPPELIVLPLNATVSDLKTEASNAFQDVYLMYKRFQVDELFGCSSADDSTPVKLLIGSTELVRVRGKCIGKNVLSRFQRERGLERWTVDCSCGAKDDDGERMLACDACGVWRHTRCSGILHADPVPVRFLCPRCQNFELRPYSSGH 686
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco01g0423 686 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 15 680 - -
Acco01g0423 686 ProSitePatterns Uncharacterized protein family UPF0054 signature. 184 194 IPR020549 -
Acco01g0423 686 Pfam PHD-finger 630 676 IPR019787 -
Acco01g0423 686 CDD PHD_MMD1_like 629 674 - -
Acco01g0423 686 SUPERFAMILY FYVE/PHD zinc finger 618 676 IPR011011 -
Acco01g0423 686 SMART PHD_3 629 675 IPR001965 -
Acco01g0423 686 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 615 678 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco01g0423 Acco-ChrAcco01 5124390 5129620 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco01g0423 83 674 PHD Transcription Factor Family AT5G22260 29.811 1.41e-84 278
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Acco01g0423 PHD 3.1e-08 CL0390