Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco01g0422 ATGGTTGTATTTGACAAGTTGGTGAAGGAACTTCAGGAACCTGTAGACTTTGAACTGCCAGATTGGAGTGATAAGTGGAAGCCAATGCCTTTCACCTCTATAAAACGCAATATATATCGCACGAAGAAGGTCAGAAAACGACTTGATGATGATGATGGCATTTTCTGTCCCTGTACTCCCTCTGCTGGATCTTCCAGTGTATGTGGTAAAGACTGCCTCTGTGGGATGCTGTTTTCTACTTGCTCTTCAGGCTGTAAATGTGGGAGCTCCTGTCTGAACAAACCATTTCAGAGTCGGCCTATGAAGAAGATGAAACTGGTCAAGACGGAGAAATGTGGTTCGGGTATTGTGGCTGATGAGGATATTGAACAGGGGGAGTTTGTGATAGAATATGTAGGAGAAGTCATTGATGACAAAGAATGTGAACAGAGGCTTTGGAAAATGAAACATCAAGGGGAGACAAACTTCTACTTATGTGAAATAAATCGAGATACAGTGATTGATGCAACATTCAAGGGAAACAAATCAAGATATATCAACCATAGTTGCTGCCCCAACACTGAGATGCAGAAATGGATAATTGACGGTGAAACAAGAATTGGCATATTTGCAACTCGTGACATTAAAAAGGGGGAACATCTGACGTATGATTACCAGTTTGTTCAGTTTGGTGCAGATCAGGATTGTCATTGTGGTGCTGTTGCATGCAGGCGTAAGCTGGGGGTTCGACCACCCAAGCCCAAAGTGGCTTCTGATGCTGCAGTAAAGTTAGTTGCATATCAGGTGGTTTCATCTCCTCCAAAGAAATCACAGGCTCAACAGGAAATAGATTATTTGAACACGCACTATAGATAA 855 0.4246 MVVFDKLVKELQEPVDFELPDWSDKWKPMPFTSIKRNIYRTKKVRKRLDDDDGIFCPCTPSAGSSSVCGKDCLCGMLFSTCSSGCKCGSSCLNKPFQSRPMKKMKLVKTEKCGSGIVADEDIEQGEFVIEYVGEVIDDKECEQRLWKMKHQGETNFYLCEINRDTVIDATFKGNKSRYINHSCCPNTEMQKWIIDGETRIGIFATRDIKKGEHLTYDYQFVQFGADQDCHCGAVACRRKLGVRPPKPKVASDAAVKLVAYQVVSSPPKKSQAQQEIDYLNTHYR 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco01g0422 284 Pfam SET domain 113 218 IPR001214 GO:0005515
Acco01g0422 284 SUPERFAMILY SET domain 21 237 IPR046341 -
Acco01g0422 284 Pfam AWS domain 65 98 IPR006560 GO:0005634|GO:0042054
Acco01g0422 284 SMART shorttest3 51 101 IPR006560 GO:0005634|GO:0042054
Acco01g0422 284 ProSiteProfiles AWS domain profile. 51 100 IPR006560 GO:0005634|GO:0042054
Acco01g0422 284 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 24 270 IPR025787 -
Acco01g0422 284 SMART PostSET_3 225 241 IPR003616 -
Acco01g0422 284 ProSiteProfiles Post-SET domain profile. 225 241 IPR003616 -
Acco01g0422 284 ProSiteProfiles SET domain profile. 102 219 IPR001214 GO:0005515
Acco01g0422 284 Gene3D SET domain 9 257 IPR046341 -
Acco01g0422 284 FunFam Histone-lysine N-methyltransferase 17 257 - -
Acco01g0422 284 CDD SET_ASHR3-like 103 241 - -
Acco01g0422 284 PANTHER SET DOMAIN PROTEINS 13 270 - -
Acco01g0422 284 SMART set_7 102 225 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco01g0422 Acco-ChrAcco01 5114772 5117572 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco01g0422 81 240 C2H2 Transcription Factor Family AT2G23740 35.000 5.64e-24 99.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Acco01g0422 SET 8.8e-20 No_clan