Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco01g0404 ATGGGTTTTTCTTTTTCACAACCACTTACTTTCCTCTTCTTCTCTCTCCTAGTTTTTGCTCTCTTCTTGAACCCAAAATGGGTATGTGGGGATACAGAGCTAAGAGCACTAATGGATATCAAAGCCGTTTTGGACCCTGAAAGCCATTATTTGTCTTCATGGACTATTAACGGAAAACCATGTGATGGTTCGTTTGAAGGAGTTGGTTGTAACGAGAAGGGTCAAGTGGCTAACATTTCATTGCAGGGAAAAGGTCTATCTGGGAAGCTTTCGCCTGCCATTGCTGAGCTCAAGCAACTTACAGGGCTTTACTTGCATTATAACTCCTTGCAGGGAACTATTCCCAGAGAAATTGCCAACTTGACTTTCTTAAGTGACTTGTATTTGAACGTGAATAATTTATCTGGTGAAATCCCTCCTGAGATTGGCAAAATGAAGAAGCTACAAGTTTTGCAGCTTTGCTATAATCAGTTGTCAGGAAGCATACCAACACAGCTAGGCGCACTGAAGAAACTTGTGGTTCTTGCTCTACAGTCAAATCAATTAGCTGGTGCCATCCCTGCAAGTTTAGGTGATTTGGGAATGCTAATGAGGCTTGATCTAAGCTCTAATCGCCTCATCGGTTCCCTTCCCTCTACATTAGCCGATGCTCCTTCGCTTCGAGTTCTAGATGTTCGCAACAACACCCTTTCTGGAAATGTACCTCCTGCTCTGAAGAGACTGGACGATGGATTTTTGTATGAGTACAATTTGGGATTATGTGGAGTTGGGTTTTCATCCTTGAAAACTTGCAATTCTTCGGGTCAAAGTAATCCTGAGAGGCCTTATAAACCTTATGGAGCTGGTTTTGGTGGTACATCAGCGAAAGATATACCAGAAACTGCAAACGTGCCACTTCCTTGCAATGGAACTCAGTGCCAAAATTCGTCAAAACCCAAACAATCAGCATCTTCTATCATTGTTGGCATAGTTGTGTTTGCAATTGCAGTGCCAACAATTGGTGTTCTAACTTTCACACAGTACCGTAGGCGAAATCAAAAGCTTGGAAACTCGTTTGATATCTCAGATAATGGTCTAATCATGAACCAAGCCAAGGGTACATACCAAAAAAATGGATCTCCTTTGGCCAGCCTTGAGTACTCTAATGGCTGGGACCCGTTGGCTGAAAGCCGGAATTTCATGGGTGATAGCTATGACGTGTTCCATAGTTTCAGGTTCAACTTGGAAGAGGTCGAGACTGCTACTCAGTATTTCTCAGAGTTGAACATGTTGGGTAAGAGTATCTTCAGCGCAACGTATAAGGGAATGTCAAGAGATGGATCTATTGTTGCCATTAAAAGAATCAGCAAAACAAGCTGCAAGAGTGATGAATCTGAGTTTTTGAAGGGACTTCACATTTTGACCTCACTGAGGAACGAGAATTTAGTAAGGTTGAGAGGATTTTGTTGCTCAAGGGGGCGAGGCGAGTGTTTTCTAGTCTATGATTTTGTTCATAATGGAAATCTTTCGTGCTACCTCGATGTCAACGAAAGTGAAGGACAAGTCCTTGAATGGTCAACTAGAGTTTCTATTGTTAAAGGCATCGCTAAAGGAATGGCATATTTACATGCCTACAAACCAAACAAGCCAGCCCTTGTTCACCAAAACATCTCAGCTGAGAAGGTGCTCATCGATCAGCGATTCAACCCAATGCTTTCAGATTCCGGCCTTCACAATCTTCTTACCGATGACATTGTCTTCTCAGCACTTAAGGCTAGCGCAGCAAAGGGTTATTTGGCTCCTGAATACACGACCACCGGCAGGTTCACAGAGAAAAGTGATGTGTATGCTTTTGGAGTGCTTCTTTTGCAGATCATCTCTGGGAAAAGGAAGATCACTAGCTCGATGTGCCTTGCTGCAGAATCTTCAAGACTTGAAGAACTCATTGACCCAAATCTCCATGGAAGATTCATTGAATATGAGGCTTCGAAGCTTGTGAAAATGGCCTTGCTTTGCTCCCATGAGTCTCCTTTTGAGAGGCCATTGATGGAAGCCATTGTTCAAGAACTTGAAAGTTTCAATATTTGTCTCTGA 2073 0.4274 MGFSFSQPLTFLFFSLLVFALFLNPKWVCGDTELRALMDIKAVLDPESHYLSSWTINGKPCDGSFEGVGCNEKGQVANISLQGKGLSGKLSPAIAELKQLTGLYLHYNSLQGTIPREIANLTFLSDLYLNVNNLSGEIPPEIGKMKKLQVLQLCYNQLSGSIPTQLGALKKLVVLALQSNQLAGAIPASLGDLGMLMRLDLSSNRLIGSLPSTLADAPSLRVLDVRNNTLSGNVPPALKRLDDGFLYEYNLGLCGVGFSSLKTCNSSGQSNPERPYKPYGAGFGGTSAKDIPETANVPLPCNGTQCQNSSKPKQSASSIIVGIVVFAIAVPTIGVLTFTQYRRRNQKLGNSFDISDNGLIMNQAKGTYQKNGSPLASLEYSNGWDPLAESRNFMGDSYDVFHSFRFNLEEVETATQYFSELNMLGKSIFSATYKGMSRDGSIVAIKRISKTSCKSDESEFLKGLHILTSLRNENLVRLRGFCCSRGRGECFLVYDFVHNGNLSCYLDVNESEGQVLEWSTRVSIVKGIAKGMAYLHAYKPNKPALVHQNISAEKVLIDQRFNPMLSDSGLHNLLTDDIVFSALKASAAKGYLAPEYTTTGRFTEKSDVYAFGVLLLQIISGKRKITSSMCLAAESSRLEELIDPNLHGRFIEYEASKLVKMALLCSHESPFERPLMEAIVQELESFNICL 690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco01g0404 690 ProSiteProfiles Protein kinase domain profile. 418 687 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco01g0404 690 Gene3D Phosphorylase Kinase; domain 1 389 496 - -
Acco01g0404 690 Gene3D Transferase(Phosphotransferase) domain 1 497 688 - -
Acco01g0404 690 SUPERFAMILY L domain-like 29 239 - -
Acco01g0404 690 Pfam Leucine rich repeat 172 230 IPR001611 GO:0005515
Acco01g0404 690 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 148 686 IPR046959 -
Acco01g0404 690 Pfam Leucine rich repeat N-terminal domain 32 71 IPR013210 -
Acco01g0404 690 Pfam Protein tyrosine and serine/threonine kinase 424 683 IPR001245 GO:0004672|GO:0006468
Acco01g0404 690 FunFam Protein NSP-INTERACTING KINASE 2 497 687 - -
Acco01g0404 690 FunFam Protein NSP-INTERACTING KINASE 2 389 496 - -
Acco01g0404 690 FunFam Protein NSP-INTERACTING KINASE 2 30 179 - -
Acco01g0404 690 Gene3D Ribonuclease Inhibitor 27 272 IPR032675 -
Acco01g0404 690 SUPERFAMILY Protein kinase-like (PK-like) 400 686 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco01g0404 Acco-ChrAcco01 4800215 4803273 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco01g0404 16 531 Miscellaneous Gene Families AT4G22730 54.095 0.0 541
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IV Acco01g0404 PK_Tyr_Ser-Thr 9.1e-36 CL0016