Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco01g0360 ATGGCTCCGTCACCGGTGGATCACAACGGCGAGTCCACATCCGGTGAGAACCAGAGATCTATTCCTACGCCGTTCCTCACCAAGACGTATCAGCTTGTCGACGATCTAACCATAGACGATGTGATTTCCTGGAACGAAGATGGATCTACTTTCATCGTTTGGAACCCTGCCGAATTCGCCAGAGATTTGCTTCCTAAATATTTTAAGCACAACAACTTCTCTAGCTTTGTTCGCCAACTCAACACCTATGGATTCAGAAAGGTTGTACCGGATCGGTGGGAATTCTCGAACGAGTGTTTCCGCCGAGGCGAGAAACGGCTTCTGTGCGAAATACAACGACGGAAGATTTCGACGCCTTCGACGCCGACGTCGCCTGCAGCGAAGGCCGGTGCCACTCCGACTGTGGCAGTTCCGGCGCCTGTGCCGTTGACTTCTATACCTACGGCGATGCCGATCATATCGCCATCAAACTCAGACGAGGAGCAAGTGATTTCGTCGAATTCGCCGTCCTCCAAAGCTCCGGCGGAGCTCATAGACGAGAACGACCGGTTGCGAAAAGAGAACGTGCAGCTGTCGAAGGAATTAACGGAGATGAGATCTCTCTGCAACAATATTTTTTCTCTGTTATCCAACTACGCTAACAACCAAATCGACGGTGCTTTACAAGGAAAAGAAATCGTGAAACCACTGGATTTGATGCCATCGAAACGGAACTCCGGGGGGGAGGAGCCGTCGGCGGTGGACGAGCTAAATCCCAAGCTGTTTGGGGTGGCGATTGGTGCGAAGAGAGCGAGAGAAGCAAGCGGTGTAACGGAGGAGGAGGACACACTGTTAAGCTTGCATCAGCCGGGGCCAGCGGAGGTGAAATCGGAGCCGCTGGATTGTCAGAACCATCGAGAGAATCAGGAGACACCATGGCTGAATCAATGCGAGATAGCGAATCAGAGGGTGTGTAATTAG 960 0.5208 MAPSPVDHNGESTSGENQRSIPTPFLTKTYQLVDDLTIDDVISWNEDGSTFIVWNPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDRWEFSNECFRRGEKRLLCEIQRRKISTPSTPTSPAAKAGATPTVAVPAPVPLTSIPTAMPIISPSNSDEEQVISSNSPSSKAPAELIDENDRLRKENVQLSKELTEMRSLCNNIFSLLSNYANNQIDGALQGKEIVKPLDLMPSKRNSGGEEPSAVDELNPKLFGVAIGAKRAREASGVTEEEDTLLSLHQPGPAEVKSEPLDCQNHRENQETPWLNQCEIANQRVCN 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco01g0360 319 PRINTS Heat shock factor (HSF) domain signature 76 88 IPR000232 GO:0003700|GO:0006355|GO:0043565
Acco01g0360 319 PRINTS Heat shock factor (HSF) domain signature 63 75 IPR000232 GO:0003700|GO:0006355|GO:0043565
Acco01g0360 319 PRINTS Heat shock factor (HSF) domain signature 25 48 IPR000232 GO:0003700|GO:0006355|GO:0043565
Acco01g0360 319 Gene3D - 17 115 IPR036388 -
Acco01g0360 319 Pfam HSF-type DNA-binding 25 114 IPR000232 GO:0003700|GO:0006355|GO:0043565
Acco01g0360 319 MobiDBLite consensus disorder prediction 1 22 - -
Acco01g0360 319 MobiDBLite consensus disorder prediction 7 22 - -
Acco01g0360 319 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 14 235 IPR027725 -
Acco01g0360 319 SUPERFAMILY "Winged helix" DNA-binding domain 22 114 IPR036390 -
Acco01g0360 319 SMART hsfneu3 21 114 IPR000232 GO:0003700|GO:0006355|GO:0043565
Acco01g0360 319 ProSitePatterns HSF-type DNA-binding domain signature. 64 88 IPR000232 GO:0003700|GO:0006355|GO:0043565
Acco01g0360 319 MobiDBLite consensus disorder prediction 265 292 - -
Acco01g0360 319 FunFam Heat stress transcription factor B-4 17 115 - -
Acco01g0360 319 MobiDBLite consensus disorder prediction 155 174 - -
Acco01g0360 319 Coils Coil 181 201 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco01g0360 Acco-ChrAcco01 4330035 4331080 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco01g0360 1 319 HSF AT5G62020 49.853 1.05e-93 278
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Acco01g0360 HSF_DNA-bind 9.1e-33 CL0123